Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq165 87.8 1e-12 seq89 87.8 1e-12 >seq165 Length=56023 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || ||||| |||||||||||||||||| || | Sbjct 52179 CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTC 52120 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || |||| |||||||| || || ||||| |||||||| || || Sbjct 52119 AGAGTG-CGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 52061 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| |||||||| Sbjct 52060 GATGCCCTCCTTGTCCTGAATCTTTTGCTT 52031 >seq89 Length=77706 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| ||||| || ||||||||| |||||||| || || Sbjct 73417 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC-GCT 73475 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| |||||||| || || ||||| |||||||| || || Sbjct 73476 CAGCGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGG 73535 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 73536 AATGCCCTCCTTGTCCTGAATCTTCTGCTT 73565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| ||||| || ||||||||| |||||||| || || Sbjct 73645 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTC-GCT 73703 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||| |||||||| || || Sbjct 73704 CAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGG 73763 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 73764 AATGCCCTCCTTGTCCTGAATCTTCTGCTT 73793 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| ||||| || ||||||||| |||||||| || ||| || Sbjct 73198 AGACGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGA 73257 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||| || || ||||| |||||||| || || | || ||| Sbjct 73258 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCC 73317 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| ||| || ||||| Sbjct 73318 TTGTCCTGAATCTTCTGCTT 73337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397049005099936