Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq89 132 1e-25 seq692 129 1e-24 seq165 113 1e-19 seq262 87.8 4e-12 >seq89 Length=77706 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| |||| || || || |||| || || || ||||| || |||| Sbjct 73641 CATG-CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGT 73699 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || ||||| || | || || || |||||||||| ||||| || | Sbjct 73700 CGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAG 73759 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || ||||| || ||| |||||||| || ||||| || || | Sbjct 73760 GAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCT 73819 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || ||||||||||||||||| |||| |||||| ||||| ||||||||| Sbjct 73820 CCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 73872 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| |||| || || || |||| || || || ||||| || |||| Sbjct 73413 CATG-CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGT 73471 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || ||||| || | || || || ||||||||||| ||||| || | Sbjct 73472 CGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAG 73531 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || ||||| || ||| |||||||| || ||||| || || | Sbjct 73532 GAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCT 73591 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||||||||||||||| |||| |||||| || || |||||||| Sbjct 73592 CCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73643 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| | ||| || ||||| || | || || || |||||| Sbjct 73225 TCCTTCTGGATGTTGTAGTCGCTCAACGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAG 73284 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | || || || || || ||||| || ||| |||||||| Sbjct 73285 ATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG 73344 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || ||||| || || || || || ||||||||||||||||| |||| |||||| || Sbjct 73345 TCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACA 73404 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 73405 AAGATCTGCAT 73415 >seq692 Length=12785 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 10991 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 10932 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | ||||||||||| || |||||||||||| || || || || Sbjct 10931 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10872 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 10871 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 10812 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 10811 ATCTGCATGAT 10801 >seq165 Length=56023 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| || || || | ||| || || ||||| || |||| Sbjct 51955 CATG-CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 51897 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||| || || || | || || || ||||||||||||||||| || | Sbjct 51896 CACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 51837 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || ||| |||| ||||| || || ||||| || Sbjct 51836 GAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTG-ACGTTGTCGATGGAATCCGACGGC 51778 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || |||||||| || || || ||||||||||| |||||||| Sbjct 51777 TCCACGTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 Score = 111 bits (122), Expect = 4e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || || || | ||| || || ||||| || ||||| Sbjct 52407 CCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 52348 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || | ||| Sbjct 52347 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52288 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || ||||| || ||| |||| ||||| || || ||||| || || || Sbjct 52287 ATGCCCTCCTTGTCCTGAATCTTTTGCTTG-ACGTTGTCGATGGAATCCGACGGCTCCAC 52229 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || |||| ||||||||||| |||||||| Sbjct 52228 GTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 104 bits (114), Expect = 6e-17 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| || || || | ||| || || || || || |||| Sbjct 52183 CATG-CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 52125 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||| || || || | || || || ||||||||||||||||| || | Sbjct 52124 CACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 52065 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || ||| |||| ||||| || || ||||| || Sbjct 52064 GAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTG-ACGTTGTCGATGGAATCCGACGGC 52006 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || |||| ||||||||||| |||||||| Sbjct 52005 TCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 >seq262 Length=51431 Score = 87.8 bits (96), Expect = 4e-12 Identities = 185/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || ||||| | ||| || ||| || || || ||||| | | ||| ||||| || | Sbjct 37439 ATGTATCGAGGACTGGCAGCATCTTTTCCTCCTTGCAACCGAGTACCAAACTGTCCGGAC 37380 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 || ||| | || ||||||| |||||| |||| || || | ||| || || ||| Sbjct 37379 GGATACAGCAGCGGGAGGTTATTGGAGCCGACAAAATCTTGCGCCATGTTGACAATCGTC 37320 Query 325442 CCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGA 325499 || ||||| ||||| ||||||||||| || | |||| ||||| |||||| | Sbjct 37319 GAGTGTAGAGAAGCTTCTCCATGGTGATACGCCGTGTGCTCACTGCA--GTAACCAGCCA 37262 Query 325500 ACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCC 325559 || || || ||||| || |||| || || ||||| ||| | | | | ||| |||| Sbjct 37261 GTTGCGCCACTTTCACTTCACTCGTTAATTTCCGCTTCAAACAGGCAAAAAGCACCTTCC 37202 Query 325560 GTTGAGAAGGTTTGAAACCATCAACGACCGACGG 325593 | || || |||| ||||| || ||||| || Sbjct 37201 GCTGCGAGATCTTGAGCCCATCGACAACCGAAGG 37168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179612563556704