Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 156 9e-33 seq7 127 5e-24 seq21 104 5e-17 seq262 96.9 8e-15 seq136 91.5 3e-13 >seq2 Length=292639 Score = 156 bits (172), Expect = 9e-33 Identities = 668/1041 (64%), Gaps = 45/1041 (4%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| |||||| Sbjct 13364 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCAAG 13423 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || |||||| ||||||||||| ||||| |||||||| || | |||||| || || Sbjct 13424 GTGCGACTCGATATGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 13483 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| | || || |||| ||| || | || Sbjct 13484 CTTCCACACCTGGCCACTGGTCGGCTCCACCTCACCAGTCAGCATCTTGATCATCGTAGA 13543 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATT 333553 || || ||||| || || | ||| | || | || | | || | | || | Sbjct 13544 CTTACCGGCACCGTTGGGTCCCAGCACGGCGATAC--GACTCGACAGAGCACACGTCACT 13601 Query 333554 --CACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 333610 | ||||| | | || |||||||| |||| | | | || ||| || Sbjct 13602 GAAATGTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTA-CGAGCAGTTCGTCAG 13660 Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG------ 333664 ||||||| |||| ||||| | | ||||| || ||||| || Sbjct 13661 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCCGGGAAAAC 13720 Query 333665 GAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTT 333724 |||||| ||||| ||| || |||| || ||||||| | | || || || Sbjct 13721 GAACTT-CACGT--TCTCCGACTCG---AGCTCGTAGTAGGCCTTAGCCTCAGGCTTCTG 13774 Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 || |||||||| || || || |||||||| |||||||||| || | |||||| || Sbjct 13775 CTCCACGAACTTCGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTTTCGTAGTG 13831 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 |||||| |||||| || ||| ||||| || |||||||| ||||| || | | | Sbjct 13832 GATAATGTTGGTGCAGACCTTGTCAAGGAAACCAGAGTCGTGCGACACCATGATAGAGGT 13891 Query 333845 AACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGA 333902 |||| | | | || ||||||| ||| || ||||| ||||| ||| | Sbjct 13892 CACGTTCGGCAAGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCCAAG 13949 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 13950 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 14009 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATA 334022 | |||||||| ||||| || || ||||| ||| || || || || || Sbjct 14010 TCCAGTTTCATCTTCCAACCACCAGAAAGGGTGCCAA------CACCCTGAGCCTGCATC 14063 Query 334023 TCAAAG--CCAACCGATTCT----AGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 334076 || | |||||| || ||||| || || || || | | | Sbjct 14064 TCCGGGGTGAAACCGACGCTGGCGAGAGTGTCCTTGACCTCCTCGCGCG------GGGTG 14117 Query 334077 TCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCG 334136 | ||| | | ||||| || |||||||| | | | | | | || || | Sbjct 14118 TTCTTCAGGTCCTCATCGTTCAAGATGAAGTCCACAACCGAGAGCTCGGCCTCCGAAGCC 14177 Query 334137 TCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGG-GAACCCTTCAAG 334195 | || | ||| || ||| | | || |||| | | ||| | || ||| || ||||| Sbjct 14178 TGAAGGTTGTGCTCAACGAACACGGTCTTCAGCTCGT-CGCGGCTGGGGAAACCCTCAAG 14236 Query 334196 CTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAG 334255 ||| ||||| ||| ||||||||||| || || ||||| ||||| || |||||||| Sbjct 14237 CTGGCCGTTGGAAATGGCGCGCATCAGGGTCGACTTACCACAACCGTTGGGGCCACACAG 14296 Query 334256 ACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACC 334315 |||||| |||| ||||||||||||| | || | |||||||||||||| | ||||| Sbjct 14297 ACCGTAACGGTGTCCACGCTTCAGACGAAGGCGGGCGTTGTTCAGAAGAATCATACCACC 14356 Query 334316 ATATGCCAGAGAAAATTCACA 334336 || || || || || ||||| Sbjct 14357 GTAGGCAAGCGAGAACTCACA 14377 >seq7 Length=190069 Score = 127 bits (140), Expect = 5e-24 Identities = 563/867 (65%), Gaps = 32/867 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| |||||||| | ||| |||| ||| Sbjct 52618 TTCCCCATCCAGGAGCATGAGGTGTGGCAGATGTACAAGAAGGCGGAGGCTTCCTTCTGG 52559 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || | ||||| || ||| ||| ||| | |||||| || || |||| || Sbjct 52558 ACGGCTGAGGAGCTTGATCTCGT-GCACGACCTGAAGGACTGGGGC---AACCTCACGGA 52503 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 |||| || ||||||||||| ||| | || | ||| ||||| | | ||| ||||| || Sbjct 52502 TAACGAGCGCCATTTCATCAAGCACGTGCTCGCTTTCTTCGCTGCCAGCGACGGTATCGT 52443 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || ||| | ||||| || || || ||| || || || || || Sbjct 52442 GAACGAGAACCTGGCCATGAACTTCAGCAATGAGGTGCAGGTGCCTGAAGCTCGCTGCTT 52383 Query 243114 TTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTA 243169 || | | ||| | |||| | ||| || || || || || | || || | Sbjct 52382 CTACGGCTTCCAGATTGCCATTGA--GAAC--ATTCACTCGGAGGTCTACTCGCTGCTCA 52327 Query 243170 TCGACGCGCTTATTTCAGATGA-ACAAGAGCGAA--ACGAGCTTTTCGACGCCATCGAAA 243226 ||||| || || ||| | || || | | ||| || | ||| | || ||||| | Sbjct 52326 TCGACACG--TACATCA-AGGACACCATTGAGAAGGACCACCTTCTGCGTGCTATCGAGA 52270 Query 243227 ACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286 |||||| || || || ||||| || ||||| | | |||| || || || | Sbjct 52269 CCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTGGTGTGACCCGCGTGTGT 52210 Query 243287 CATTT---GCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT-ATTCTGTTTTCCGGG 243342 ||| || |||||||| || || | | |||| || ||| ||| | ||||| || Sbjct 52209 CATCCTACGCGGAGCGTCTGGTTGCTTTCGC-TGCGGTGGAGGGCATTTTCTTTTCGGGA 52151 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 |||||| ||||||| ||||| ||| || | |||||||| || | | || Sbjct 52150 TCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCG 52091 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTC 243461 |||||| |||| || || ||||||||| | ||| | |||| ||| || |||| || Sbjct 52090 AACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGATTTCGCGTGC-CTCCTGTACTC 52032 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGG-TCAAACAAATCAT-CACAGAAGCAGTT 243519 |||||| |||||||| || || || || | | ||| | | || | || || Sbjct 52031 CAAGCTCGTCAACAAGCTGCCGGA-GAGCCGCATCCATGAGATCGTTCGCA-ACGCTGTG 51974 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| | || || | | || | |||| ||| |||||||||||||| Sbjct 51973 GTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGTGGAGCTGATTGGCATGAACTCG 51914 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 | |||||| | ||||||||||| || || || |||||| | | | | || || | Sbjct 51913 GCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCTGCTGTACTCTCTGGGCG-T 51855 Query 243640 GAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGG 243698 | ||| | ||| || |||||||||| || | || ||||| | || ||||| || || Sbjct 51854 GTCCAAGATCTACCACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTACAGGG 51795 Query 243699 GAAAACTAACTTCTTCGAAAAGCGTGT 243725 || || ||||||||||| |||||||| Sbjct 51794 CAAGACCAACTTCTTCGAGAAGCGTGT 51768 >seq21 Length=128421 Score = 104 bits (114), Expect = 5e-17 Identities = 558/875 (64%), Gaps = 30/875 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| ||||| || | |||| | || ||| Sbjct 37270 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCCGAGGCATCTTTCTGG 37211 Query 242935 ACCACCGAGGAAGTTCCTCTGA-ACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||||||| | ||| || | ||| | ||||||| | || || | || Sbjct 37210 ACTGCCGAGGAACTCGACCTGGTACAC-GACCTGAACGACTGGGCCAAG---CTGACGGA 37155 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | | || || || |||||||| ||| | || | |||||||||| || ||||| || Sbjct 37154 CAATGAGCGCCACTTCATCAAGCACGTGCTCGCCTTTTTCGCAGCAAGTGACGGTATCGT 37095 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 | || || || | ||||| || || | ||| || ||||| || || Sbjct 37094 TAACGAGAACCTAGCCATGAACTTCAGCAATGAGATCCAGGTGCCCGAGGCCCGCTGCTT 37035 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | || ||| | | || || |||||| || ||| || | || || ||||| Sbjct 37034 CTACGGTTTCCAGATAGCCATTGAGAATATCCACTCGGAAGTTTACTCCCTGCTGATCGA 36975 Query 243174 CGCGCTTATTTCAGATGA-ACAAGAGCGAAACGAGCTTTTCGAC-----GCCATCGAAAA 243227 | || || ||| | || ||| | |||| | || || | |||||||| | Sbjct 36974 CACG--TACATCA-AGGACACAGTCGAGAAA---GATTATCTGCTGCGTGCCATCGAGAC 36921 Query 243228 CATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATC 243287 || ||| || || || ||||| || ||||||| | |||| || || || || Sbjct 36920 GATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTGTGATCCTCGTGTGTC 36861 Query 243288 ATTTG---CTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | | | ||||| || | || | | || || || || | || || || Sbjct 36860 TTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGGGCATCTTCTTCTCGGGATC 36801 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| | ||||| ||||| ||| || | |||||||| ||| | | || || Sbjct 36800 GTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAA 36741 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| | ||||| || |||||||| | ||| | |||| || ||||| || || Sbjct 36740 CGAGATGATCAGCCGGGACGAGGGAATGCACACGGATTTCGCCTGCCTCATGTACTCGAA 36681 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAAC-AAATCATCACAGAAGCAGTTGAAA 243523 |||| ||||||||| || || || | || |||||||| || || || | Sbjct 36680 GCTCGTGAACAAGCTGCCGGA-GAGCCGCGTACACGAAATCATCCGCGACGCTGTCACCA 36622 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT-ATTGGCATGAACTCTGAA 243582 || | || ||| | |||||| || | || || | || || ||||||||||| | Sbjct 36621 TTGAGCACGAGTTCGTGTGCGACTCTCTCCC-TGTGGAGTTGATCGGCATGAACTCAGCG 36563 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT--TTTCATCGCGCTTGGTTATG 243640 |||||| | |||||||| || ||||| || || ||| | ||| || | ||| | || Sbjct 36562 CTCATGTGCCAGTACATTGAGTTCGTGGCAGATCGCCTGCTTTACTCAC---TGGGTGTG 36506 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||| | |||||| ||||| || || | || ||||| | || ||||| || || Sbjct 36505 TCCAAGATTTACAACGTGAAGAATCCATTCGACTGGATGGACATGATCTCGCTCCAGGGC 36446 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 || || ||||| ||||| || || ||| |||| || Sbjct 36445 AAGACAAACTTTTTCGAGAAACGGGTCGGTGAGTA 36411 >seq262 Length=51431 Score = 96.9 bits (106), Expect = 8e-15 Identities = 286/439 (65%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 297278 GACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACA 297337 |||||||| |||||||| || | || |||||||| | |||| || | |||||| Sbjct 37604 GACCAACCCGTACCGATACCTTCGGCTCCGTTCACCAGCAGCATCGGGATGATAGGCACG 37545 Query 297338 TAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCC 297397 || || | || || | | | ||| ||||| | | ||| || | ||||| Sbjct 37544 TAGTAAACGGGCTCAACCGGGAAACCATCATCGTCCGCATACCGTAGCAACGCGTCGTCT 37485 Query 297398 GTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTC 297457 || ||| ||| ||||||| | | ||| ||||| || ||||| | ||| Sbjct 37484 TCTTCAGGGAATACCAGTCGAGTGTACTTTTGAAGTAACGTGAAGATGTATCGAGGACTG 37425 Query 297458 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTG 297517 || ||| || || || ||||| | | ||| ||||| || ||| ||| | | Sbjct 37424 GCAGCATCTTTTCCTCCTTGCAACCGAGTACCAAACTGTCCGGACGGATACAGCAGCGGG 37365 Query 297518 ATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCT 297577 | ||||||| |||||| |||| || || | ||| || || ||| || ||||| ||| Sbjct 37364 AGGTTATTGGAGCCGACAAAATCTTGCGCCATGTTGACAATCGTCGAGTGTAGAGAAGCT 37305 Query 297578 TCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACCTTCA 297635 || ||||||||||| || | |||| ||||| |||||| | || || || |||| Sbjct 37304 TCTCCATGGTGATACGCCGTGTGCTCACTGCA--GTAACCAGCCAGTTGCGCCACTTTCA 37247 Query 297636 CGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGA 297695 | || |||| || || ||||| ||| | | | | ||| ||||| || || |||| Sbjct 37246 CTTCACTCGTTAATTTCCGCTTCAAACAGGCAAAAAGCACCTTCCGCTGCGAGATCTTGA 37187 Query 297696 AACCATCAACGACCGACGG 297714 ||||| || ||||| || Sbjct 37186 GCCCATCGACAACCGAAGG 37168 >seq136 Length=63566 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || ||||| || ||||| || ||| ||| | | ||||||| Sbjct 43268 TTGGTGAAAATATAACGAGCACTGGCCGCGTCCTTGCCGCCCATCAAACGTGTACCGAAC 43327 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || || ||| || ||| || |||||||| || ||||||| || | ||| Sbjct 43328 TGACCAATGGGGGACAGAAGGTGGATATTGTTGCTTCCAACGAAATCCTGCGCCATGTTT 43387 Query 297554 ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA 297613 ||||| ||||||||| |||||| ||||| ||||| ||||| | ||||| Sbjct 43388 ACGATACAGCCTTGCAGACTCTGTTCGCCGTGGTGGTAGGCAGAGTGCTCAGATACGTAT 43447 Query 297614 CCGCTGAACTGTGCAACCTT 297633 || || |||||||||||| Sbjct 43448 CCAGCGAGCTGTGCAACCTT 43467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102840886360800