Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq692 116 4e-21 seq165 109 6e-19 seq89 104 3e-17 >seq692 Length=12785 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 10993 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 10934 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | | ||||||||| |||||| || |||| | | | Sbjct 10933 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 10875 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 10874 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 10815 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 10814 AAGATCTGCAT 10804 >seq165 Length=56023 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| ||| |||||| || | || || Sbjct 51934 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 51875 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||| | || | || |||||||||| Sbjct 51874 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 51815 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || ||||| |||| ||| | | | | || || ||||| |||| || || || | Sbjct 51814 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCT 51756 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| || || ||||| || ||||| ||||| || Sbjct 51755 TGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 51722 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| ||||| ||||| ||| |||||| || | || || Sbjct 52162 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52103 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||| | || | || |||||||||| Sbjct 52102 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52043 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || ||||| |||| ||| | | | | || || ||||| || | || || || | Sbjct 52042 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 51984 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| | |||||| || ||||| ||||| Sbjct 51983 TACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| ||| |||||| || | || || Sbjct 52390 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52331 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||| | || | || |||||||||| Sbjct 52330 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52271 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || ||||| |||| ||| | | | | || || ||||| || | || || || | Sbjct 52270 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 52212 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| | |||||| || ||||| ||||| Sbjct 52211 TACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 >seq89 Length=77706 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| || | || |||||| || || ||||| || ||| || || || Sbjct 73429 CGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCG 73488 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| || || ||||||||||| | || | || ||||||| Sbjct 73489 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 73548 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| || || || || | ||| | | | | ||| || ||||| || | |||||| Sbjct 73549 TCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGAT 73607 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| | ||||| |||||||| ||||| Sbjct 73608 CGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73643 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||||| ||||| || | || |||||| || || ||||| || | Sbjct 73189 CCGCCACGTAGACGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 73248 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || |||||||| |||||||| || || ||||||||||| | || Sbjct 73249 AACGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGA 73308 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| || || || || | ||| | | | | ||| || ||||| Sbjct 73309 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCAC 73367 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||| || || ||||| | ||||| |||||||| ||||| Sbjct 73368 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73415 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| || | || |||||| || || ||||| || ||| || || || Sbjct 73657 CGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCG 73716 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || | |||||||||||| | || | || ||||||| Sbjct 73717 TCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 73776 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| || || || || | ||| | | | | ||| || ||||| || | |||||| Sbjct 73777 TCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGAT 73835 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || ||||| | ||||| || ||||| |||||| Sbjct 73836 CGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 73872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543194004837120