Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq439 340 2e-88 >seq439 Length=25150 Score = 340 bits (376), Expect = 2e-88 Identities = 1090/1679 (65%), Gaps = 45/1679 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || |||||||| |||||||| || || || || || || |||| || || |||||| Sbjct 19114 GCTACCCCGACGCTGTTCAATGCTGGTACACCACGACCGCAATTGTCCTCTTGCTTCCTG 19055 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || ||| ||| ||||| ||| || || | ||||| | | ||| | ||||| | Sbjct 19054 TTGGCGATGCAGGATGACTCGATCGAGGGCATCTACGACACCTTGAAGCAGTGTGCCTGC 18995 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || || ||| | ||| | | ||||| | | | Sbjct 18994 ATCTCCAAGTGGGCTGGAGGTATTGGCATTAGTATGCACAATATCCGTGCGACGAACAGC 18935 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || ||||| ||||||| || | |||| ||| | | |||||||| Sbjct 18934 TACATCCGCGGCACGAATGGTTCCTCCAATGGAATTATCCCCATGTTGAGAGTCTTCAAT 18875 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || ||||||||||||||||| || || | | | ||||| || ||||| |||| Sbjct 18874 GATACCGCTCGCTACGTGGACCAGGGAGGAGGCAAGCGCAAGGGCTCCTTCGCCATCTAC 18815 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || ||| | ||| | || || || ||||| ||||| ||| Sbjct 18814 CTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTGGATCTCCGCAAGAATCACGGTAAC 18755 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||| | |||||||| | |||||||| || || || |||||| Sbjct 18754 GAGCTCCACCGTGCTCGTGACTTGTTCTACGCATTGTGGGTGCCCGATCTCTTCATGAAA 18695 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| || | |||||| | || ||||| |||||| ||| ||||| | | Sbjct 18694 AGGGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCTAATGAAGCTCCTGGACTCTAC 18635 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGC 94430 || || || ||||| | | || | ||||| | | ||||| || Sbjct 18634 GAGTGCTGGGGTGAAGAGTTTGAGACCCTCTACGAGAAGTACGAGAAGGAAGGGC-GTGC 18576 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | ||| || | || | |||||||| |||| | |||| ||| | || || Sbjct 18575 TCGCAAGACCATCAACGCCCAGCAGCTGTGGTTCGCGATCCTTGACGCCCAGATTGAAAC 18516 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 |||| ||| | ||| | | ||||||| | | ||| ||| |||||||||||| |||| Sbjct 18515 GGGTGTGCCTTTCATGCTCTACAAGGACGCAGCTAACCGCAAATCCAACCAGCAGAACCT 18456 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || |||| | || ||||| ||| | | ||||| || ||||| || || Sbjct 18455 GGGTACGATCCGTTCCAGTAACTTGTGCTGTGAGGTGATGGAGTACACGTCTCCCGATGA 18396 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | |||||||| || ||| ||| || || ||| |||||| ||| | Sbjct 18395 AGTGGCTGTGTGCAATTTGGCCTCTGTCGCGCTCCCCAAGTTCGTG-GAGGAG----GGA 18341 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAA 94730 || | | ||| | | ||| | ||| | || || | | || | | || Sbjct 18340 GTTTTCAGCTAC-CAGAAGCTGTACGAGGTGGTCAAGGT--GGTGACGCGT-------AA 18291 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790 ||||||| ||| |||||| |||| ||||||||| |||||| || || ||| | Sbjct 18290 TCTGAACAAGGTCATCGACGTCAACTACTACCCCGTGGTGGAGGCTCGCAAGTCCAACAT 18231 Query 94791 GAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850 | || || ||| |||| ||||| || |||||| | || |||||| | | ||||| Sbjct 18230 GCGCCACCGCCCCGTCGGTATCGGTGTTCAGGGTCTGGCTGACGCGTTCATTCTGATGAA 18171 Query 94851 TCTGCCCTAC--GACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || | | || | | | | | || | | || |||||| ||||| | ||| Sbjct 18170 CTATCCGTTCGAGAGCCAGCAGGC-CAGC-GAACTCAACAAGAACATCTTCGAGACCATC 18113 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCG-GACGG----CGGGCCAC 94963 || ||||| ||||| | |||| | ||| |||| | || || ||||| Sbjct 18112 TACTACGGTTCCATG----GAGACGTCGA--TGG--AGATTGCGAAGGAGTTGGGGCCCT 18061 Query 94964 ACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 | || |||||| || ||||| || | | |||| | || ||||||||| | ||||| Sbjct 18060 ATGAGACGTTCCAGGGCTCGCCAGCTAGCA--AGGGTGTCTTCCAGTTCGACATGTGGGG 18003 Query 95022 TGTGAAGC---CCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAA 95076 |||| || | || || |||| ||||||| | ||| | | | | || ||||| Sbjct 18002 CGTGACGCCTTCTTCTGGCCTGTGGGACTGGGCTACCCTCAAGGAG--AACGTGATCAAG 17945 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||| | ||| ||||||| ||||| |||||||| ||||| || || || |||||| Sbjct 17944 CACGGTCTTCGCAACTCGCTGCTGGTGGCTCCCATGCCGACGGCTTCTACTGCTCAGATC 17885 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| |||| || | ||| |||||| |||||||| | || ||||| Sbjct 17884 CTGGGCAACAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGTCGTGTGCTT 17825 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || ||| | || | |||||| |||| | || |||| ||||||| | Sbjct 17824 GCAGGCGAGTTCACGATCGTGAACAAGTACCTGATGAACGAGCTGATCGATCTGGGTATC 17765 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| |||| ||||| | || || | ||||||||| |||||| | | Sbjct 17764 TGGACGCCGGAGGTGCGCAACCAGATCCTGAACGACGGCGGCTCCGTGCAGAACGTGAAG 17705 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 ||| ||||| || |||||| | |||||||| |||||||||||| |||| | Sbjct 17704 GTAATCCCGGACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCT 17645 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | || |||| | |||| ||| || ||| ||| |||||||| Sbjct 17644 GTGCTGGACCTGTCTGCCGACCGTGGCGCCTACATTTGCCAGAGTCAGTCGCTCAACATC 17585 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | || | ||||||||| ||||||| |||| ||| Sbjct 17584 CACATCGCCGACCCGACGATTAGCAAGCTCACGTCCATGCACTTCTACGCCTGGAAGAAG 17525 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTT 95555 || |||||||| || ||||| || |||| | || || || ||| |||| ||||| Sbjct 17524 GGGCTCAAGACGGGCATGTACTACATGCGCGGGCGCCCGAAAGCTGACGCCATCCAGTT 17466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494706082577280