Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq692 109 5e-19 seq89 109 5e-19 seq165 104 2e-17 seq21 89.7 5e-13 >seq7 Length=190069 Score = 147 bits (162), Expect = 2e-30 Identities = 507/768 (66%), Gaps = 41/768 (5%) Strand=Plus/Minus Query 52089 GATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATC 52148 ||| |||||||| |||| |||||||||||| | || |||||||| ||| ||| | ||| Sbjct 52504 GATAACGAGCGCCATTTCATCAAGCACGTGCTCGCTTTCTTCGCTGCCAGCGACGGTATC 52445 Query 52149 GTGAACATTAACCT---CATCGAGTACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAA 52205 |||||| ||||| ||| | | || ||| | | || | || | || || | Sbjct 52444 GTGAACGAGAACCTGGCCATGAACTTCA-GCAATG--AGGTGCAGGTGCCTGAAGCTCGC 52388 Query 52206 TACTTTTATAATTTGCA-AGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | ||| ||| ||| | | ||| ||||| | ||| ||||| Sbjct 52387 TGCTTCTACGGCTTCCAGATTGC-CATTGAGAACATTCACTCGGAGGTCTACTCGCTGCT 52329 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCAC-GAGCGCGACACGCTGCTGAATGCGTTCGAGC 52323 ||| || | || || || | || ||| ||| || ||| ||| ||||| Sbjct 52328 CATCGACACGTACATCAAGGAC-ACCATTGAGAAGGACCACCTTCTGCGTGCTATCGAGA 52270 Query 52324 ACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA-----GAGCGA 52378 | | || || || | || |||||| | ||||| | | |||| || | | | Sbjct 52269 CCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTGGTGTGACCCGCGTGTGT 52210 Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438 || | | |||| | |||| |||| || ||||| || |||||| | || ||||| Sbjct 52209 CATC-CTACGCGG----AGCGTCTGGTTGCTTTCGCTGCGGTGGAGGGCATTTTCTTTTC 52155 Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498 || ||| | ||||||| | | || | | ||| | ||||| || |||| || Sbjct 52154 GGGATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTT 52095 Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TA 52555 | |||||| | || || ||||| || ||||||| || || ||||||||| || Sbjct 52094 CTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGATTTCGCGTGCCTCCTGTA 52035 Query 52556 CTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACA--CG-ATCC-TGAGCATGTTCA 52611 || |||| | ||| | | || || |||| | || |||| |||| |||| Sbjct 52034 CTCCAAG---CTCGTCAAC---AAGCTGC---CGGAGAGCCGCATCCATGAGATCGTTCG 51984 Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 | || |||| ||||| | |||||| | || |||| ||||| |||||| | | Sbjct 51983 CA-ACGCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGTGGAGCTGATTG 51925 Query 52672 GCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGC 52731 |||||||| || | ||||||| ||||||||||||||||||| || || ||| | || | Sbjct 51924 GCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCTGCT-GTAC 51866 Query 52732 AGCTC-GGGC-AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 ||| |||| | | ||| || | |||| || ||||| || | ||| ||| || Sbjct 51865 -TCTCTGGGCGTGTCCAAGATCTACCACGCCAAGAACCCGTTCGACTGGATGGACATGAT 51807 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| |||||||||||||||| ||||||||||| || |||||||| Sbjct 51806 CTCGCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 51759 >seq692 Length=12785 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 10993 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 10934 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| || || || ||||| ||||| |||||| || || | |||| Sbjct 10933 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG- 10875 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || ||||| || || ||| Sbjct 10874 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 10815 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 10814 AAGATCTGCATG 10803 >seq89 Length=77706 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || | || | | |||||||| || ||||||||||||||| Sbjct 73189 CCGCCACGTAGACGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 73248 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || || || || | |||| || ||||| ||||| ||||| Sbjct 73249 AACGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGA 73308 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| || || || || | | || | | ||| | || |||||| Sbjct 73309 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACG 73368 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| ||| || ||||| ||||||||| Sbjct 73369 TCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 73416 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||||| |||||| || || || || | Sbjct 73450 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCAGCG 73509 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| ||||| || || || ||||| || || || || | Sbjct 73510 AAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 73569 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | ||| || || |||| ||| || Sbjct 73570 TTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTC 73629 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 73630 ACAAAGATCTGCATG 73644 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||||| |||||| || || || |||| Sbjct 73678 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCG 73737 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| ||||| || || || ||||| || || || || | Sbjct 73738 AAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 73797 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | ||| || || |||| ||| || Sbjct 73798 TTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTC 73857 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 73858 ACGAAGATCTGCAT 73871 >seq165 Length=56023 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| |||| ||| || ||||| || || || || | Sbjct 52146 GACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 52087 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 52086 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACG 52027 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | || |||||| || | || | ||| ||||| |||| || || Sbjct 52026 TTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTG 51967 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 51966 ACGAAGATCTGCATG 51952 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| ||| || ||||| || || || || | Sbjct 51918 GACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 51859 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 51858 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACG 51799 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | || |||||| |||| || | ||| || ||||| || || || Sbjct 51798 TTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTG 51739 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 51738 ACGAAGATCTGCAT 51725 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| ||| || ||||| || || || || | Sbjct 52374 GACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 52315 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 52314 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACG 52255 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | || |||||| || | || | ||| ||||| |||| || || Sbjct 52254 TTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTG 52195 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 52194 ACGAAGATCTGCATG 52180 >seq21 Length=128421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 52653 CTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTG 52712 || || || ||| || | ||||||||| | | ||||||| ||||||| ||||| ||| Sbjct 36595 CTCCCTGTGGAGTTGATCGGCATGAACTCAGCGCTCATGTGCCAGTACATTGAGTTCGTG 36536 Query 52713 GCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTT 52771 || ||||| ||| || || || || | | ||| | ||||| ||||| || Sbjct 36535 GCAGATCGCCTGCTTTACTCA-CTGGGTGTGTCCAAGATTTACAACGTGAAGAATCCATT 36477 Query 52772 TGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGG 52831 || | ||| ||| || ||||| |||||||||| |||||||||||||| || ||||| Sbjct 36476 CGACTGGATGGACATGATCTCGCTCCAGGGCAAGACAAACTTTTTCGAGAAACGGGTCGG 36417 Query 52832 CGAGTA 52837 ||||| Sbjct 36416 TGAGTA 36411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496245229320960