Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq439 273 3e-68 seq21 150 2e-31 seq7 122 1e-22 >seq439 Length=25150 Score = 273 bits (302), Expect = 3e-68 Identities = 963/1479 (65%), Gaps = 40/1479 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||||| ||||| | |||| ||||| |||| ||| || || || || Sbjct 17841 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAA 17900 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| |||| || || |||||| ||||| | | | | ||| Sbjct 17901 GCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACGTTCTCC 17960 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTG--AGCTTT-GTCTCCCCCTCCCACATATCAAACTGG 116079 ||||||| ||||||| | | || | | | | ||||||| || |||||| Sbjct 17961 TTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGCGTCACGCCCCACATGTCGAACTGG 18020 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC--CTCCG 116137 | || ||| | | |||||||| |||| || |||||||| |||||| |||| || || Sbjct 18021 AAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATA-GGGCCC-CAACTCCTTCG 18078 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | || || ||| | || ||| || || ||||| || ||| || | Sbjct 18079 CAATCTCCATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGA 18138 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGA 116256 | | |||||| | | || |||| || | || || ||| || | || || ||| Sbjct 18139 GTTCGCTGGCCTGCTGGCTCTCGAACG-GATAGTTCATCAGAATGAACGCGTCAGCCAGA 18197 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316 || || ||||||| || | ||||| || | ||| || ||||| ||||| | ||||| Sbjct 18198 CCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCCACCACG 18257 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || | || ||||| ||| | || ||||| || || ||||| | || Sbjct 18258 GGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTTGACCACCTCG 18317 Query 116377 TGAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | ||||| | ||| | |||||| | ||| || || |||| || || |||| Sbjct 18318 TACAGCTTCTGGTAGCTGAAAACTCC----CTCCTCCACGA---ACTTGGGGAGCGCGAC 18370 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || |||| ||| ||||||| ||||| | |||||||| || | || || Sbjct 18371 AGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGTGTACTCCATCACCTCACAGCA 18430 Query 116496 CAAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 ||| || |||| || || |||| ||||| || || || || |||| || Sbjct 18431 CAAGTTACTGGAACGG---ATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTAGCTGC 18487 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||||||||| | ||| ||||| || | |||| | || || || ||| Sbjct 18488 GTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGCGAACCA 18547 Query 116613 TACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 || | || | ||| | ||| ||| || ||||| |||| ||||||||| || Sbjct 18548 --CAGCTGCTG--GGCGTTGATGGTCTTGCGAGCACGCCCTTCCTTCTCGTACTTCTCGT 18603 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 |||||| |||||||||||||||| |||| ||| |||| || || || | || |||||| Sbjct 18604 AGAGGGTCTCAAACTCTTCACCC-CAGCACTCGTAGAGTCCAGGAGCTTCATTAGGACAG 18662 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 || | | ||| | ||| |||| |||| ||||||||||| || || | ||| | Sbjct 18663 AACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCCACAAT 18722 Query 116788 GCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 || |||| | || ||| || | | || | | || ||||| || | |||| Sbjct 18723 GCGTAGAACAAGTCACGAGCACGGTGGAGCT-CGTTACCGTGATTCTTGCGGAGATCCAG 18781 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA-- 116904 || || | | ||| ||||||||||| |||||||| | |||| || |||||||| Sbjct 18782 GAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTGCGCTT 18841 Query 116905 -CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 | || |||||| || || | || || | || || || | | ||| || || || Sbjct 18842 GCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGGATAAT 18901 Query 116964 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 |||| || ||||| || || || || || | || | || || ||| || Sbjct 18902 TCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGTTCGTCGCACGGATATTGTGCAT 18961 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 || |||||||| || |||||||| ||||| || |||| | | | || |||| Sbjct 18962 ACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTGTCGTA 19021 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 ||| || |||||||||||| ||| | || | |||||||| |||| ||| || | Sbjct 19022 GATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGCGGTCG 19081 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202 |||||||||||| ||||| || || || || ||||| |||| | || | || |||||| Sbjct 19082 TGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAA-AAACTTCTGCGACATCA 19140 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 ||||| ||||||| | | ||||| | ||| ||||||| | || |||| Sbjct 19141 GCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCTTGTGGATACCGAGAGCCACGCGCA 19200 Query 117263 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 117322 ||| ||| | ||| || ||||| || | |||| || | |||||| | ||| Sbjct 19201 TAATCATCTGTTGCGGACGTTCCACCACTTTGCCATTGACACGGAAGAGGTATCCTCTCT 19260 Query 117323 CCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCC 117361 |||||||||||| || || ||| | | || |||||| Sbjct 19261 CCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCCC 19299 >seq21 Length=128421 Score = 150 bits (166), Expect = 2e-31 Identities = 368/543 (68%), Gaps = 21/543 (4%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || |||||||| |||||||| ||||||||||| || | ||| | Sbjct 36399 CCAGCCTTGGAGTACTCACCGACCCGTTTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAG 36458 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTG 127338 || | ||||| | || ||||| ||||| ||| |||| | | ||| |||| | | Sbjct 36459 ATCATGTCCATCCAGTCGAATGGATTCTTCACGTTGTAAATCTTGGACACACCCAGTGAG 36518 Query 127339 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACC 127398 | || || ||||| | ||| |||||||||||| |||| | | |||||||| || Sbjct 36519 TAA-AGCAGGCGATCTGCCACGAACTCAATGTACTGGCACATGAGCGCTGAGTTCATGCC 36577 Query 127399 GATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 ||| | | ||| ||||| | ||| | | |||| | | ||||||| ||||| || | Sbjct 36578 GATCAACTCCACA-GGGAGAGAGTCGCACACGAACTCGTGCTCAATGGTGACAGCGTCGC 36636 Query 127458 GTACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAG 127510 | | ||| |||| | | | || ||| | | || || | ||| | ||| | Sbjct 36637 GGATGATTTCGTGTACGCGGCTCTCCGGCAGCT-TGTTCACGAGCTTCGAGTACATGAGG 36695 Query 127511 AGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAG 127570 || || || || ||| | |||||||| ||| ||| | || ||||||||| Sbjct 36696 -----CAG-GCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGAAG 36749 Query 127571 CACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAG 127630 | ||||| |||||||| || |||||||| | |||||| |||| || || || || ||| Sbjct 36750 CTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCGAG 36809 Query 127631 AAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCT-CGGCAAAGGAGCGGGACTT 127689 |||||||| |||||||| |||||||| | || |||| ||| ||| || || Sbjct 36810 AAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACAC-G 36868 Query 127690 TGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGAT 127749 | |||| ||||| | | ||||| | ||||| || | | ||| |||| |||| ||| Sbjct 36869 AGGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCGAT 36928 Query 127750 CGC 127752 || Sbjct 36929 GGC 36931 >seq7 Length=190069 Score = 122 bits (134), Expect = 1e-22 Identities = 392/594 (66%), Gaps = 21/594 (4%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 51747 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGCGAG 51806 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || || |||||||| | || | || | | ||| || | Sbjct 51807 ATCATGTCCATCCAGTCGAACGGGTTCTTGGCGTGGTAGATCTTGGACACGCCCAGAGAG 51866 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || || || || | || |||| ||||||| |||| | | |||||||| || Sbjct 51867 TACAGCAGGCGGTCAGCCACAAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCA 51926 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | || |||| ||| | ||| | | ||| || ||||||| | || Sbjct 51927 ATCAGCTCCACCGGAAGCGAATCCCGCACAAACTCGTGCTCGATCACCACAGCGTTGCGA 51986 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTG-CGTAAAGTCTTGAAGAGTTC-- 127515 ||||| | || || | | || ||| | | ||| || || |||| |||| | Sbjct 51987 ACGATCTCATGGATGCGGCTCTCCGGCAGCT-TGTTGACG---AG-CTTG--GAGTACAG 52039 Query 127516 ----CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGC 127571 ||| || || || ||| | |||||||||||| ||||| || |||||||||| Sbjct 52040 GAGGCAC-GCGAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGC 52098 Query 127572 ACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGA 127631 |||||| |||||||| || |||||||| | |||||| || | || || || || || | Sbjct 52099 TCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGATCCCGAAA 52158 Query 127632 AGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTT 127690 |||| || |||||||| ||||| |||| |||||||| || |||| | || Sbjct 52159 AGAAAATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCCGCGTAGGA-TGACACACGC 52217 Query 127691 GTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATC 127750 | ||| ||||| | | ||||| | ||||| |||| | ||| || | ||||| ||| Sbjct 52218 GGGTCACACCACCTGAGGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATA 52277 Query 127751 GCTTCAAAGAGTTCCTTCTTTTCTGATGG-ATCTTTGATGTACTTATCTATGAG 127803 || | || | | ||| || |||| || ||||||||| | || ||||| Sbjct 52278 GCACGCAGAAGGTGGTCCTTCTC-AATGGTGTCCTTGATGTACGTGTCGATGAG 52330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485972650880