Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq439 181 2e-40 seq7 149 1e-30 seq21 96.9 6e-15 >seq439 Length=25150 Score = 181 bits (200), Expect = 2e-40 Identities = 416/617 (67%), Gaps = 11/617 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| || ||||| ||||||| | || | | | || ||||||||||| Sbjct 17453 CTTGTCCACAGTAAACTGGATGGCGTCAGCTTTCGGGCGCCCGCGCATGTAGTACATGCC 17512 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| |||| | ||||||||| | || ||||| | | || Sbjct 17513 CGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTGCTAATCGTCGG 17572 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 |||||| ||||| ||||| || ||||| || ||| ||| ||||||| || || || | Sbjct 17573 GTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATG-TAGGCGCCACGGTCGGCAG 17631 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 || | | | | ||||||| |||||||||||||||||| || || || || Sbjct 17632 ACAGGTCCAGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGT 17691 Query 204078 GTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CATCC 204134 | | || | | ||| ||||| ||| | |||||| |||| || | ||| | | Sbjct 17692 GGTCCGGGATTACCTT--CACGTTCTGCACGGAGCCGCCGTCGTTCAGGA-TCTGGTTGC 17748 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 | |||| | ||| || |||| ||||||||| || ||||| ||| | || Sbjct 17749 GCACCTCCGGCGTCCAGATACCCAGATCGATCAGCTCGTTCATCAGGTACTTGTTCACGA 17808 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 || || || || | ||||| | ||| || ||| |||| ||| | || |||| | Sbjct 17809 TCGTGAACTCGCCTGCAAGCACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATAG 17868 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||| | |||||||| || ||||| ||||||||||||| ||||| | Sbjct 17869 ACTCGTTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGCG 17928 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA---TCG 204371 ||||||| | ||||| || || | ||| || | | |||||| || | Sbjct 17929 AGTTGCGAAGACCGTGCTTGATCACGTTCTCCTTGAGGGTAGCCCAGTCCCACAGGCCAG 17988 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | || |||||||||||||||||||||| |||| || | || |||| ||||| Sbjct 17989 AAGAAGGCGTCACGCCCCACATGTCGAACTGGAAGACACCCTTGCTAGCTGGCGAGCCCT 18048 Query 204432 TGTACGTCGGATAAGGC 204448 | ||||| ||| ||| Sbjct 18049 GGAACGTCTCATAGGGC 18065 >seq7 Length=190069 Score = 149 bits (164), Expect = 1e-30 Identities = 538/835 (64%), Gaps = 20/835 (2%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| ||||||||| |||||||||||||||| | || || ||||| | |||| Sbjct 51767 CACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAA 51826 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| |||| ||| ||| | | || |||| ||||| | ||| ||||| Sbjct 51827 CGGGTTCTTGGCGTGGTAGATCTTGGACACGCCCAGAGAGTACAGCAGGCGGTCAGCCAC 51886 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 ||| |||||||| ||||| || | |||| || || | |||| || || |||| Sbjct 51887 AAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCCACCGGAAGCGA 51946 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 ||| || |||||| | ||| ||| | || || | | || |||| || || Sbjct 51947 ATCCCGCACAAACTCGTGCTCGATCACCACAGCGTTGCGAACGATCTCATGGATGCGGCT 52006 Query 159883 GTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 | | | ||||| | | | | | ||||||||||||| || ||| ||||| Sbjct 52007 CTCCGGCAGCTTGTTGACGAGCTTGGAGT---ACAGGAGGCACGCGAAATCGGTGTGCAT 52063 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || |||| |||||| || | | | || || ||||||| || ||| Sbjct 52064 GCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTT 52123 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAA 160061 |||||||| || |||| ||| ||| | | | |||| || || |||||||| || || | Sbjct 52124 CTTGAGCCAGAAGATGG-AGCAGAAGGATCCCGAAAAGAAAATGCCCTCCACCGCAGCGA 52182 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGG-----CGTTGGTGTCATGGGTCCACCTTTTGGC 160116 | || || || | ||| | | || | || ||| || |||||| ||| Sbjct 52183 AAGCAACCAGACGCTCCGCGTAGGATGACACACGCGGGTCACA-----CCACCTGAGGGC 52237 Query 160117 CCATTCAGCCTTCTT-TGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCT 160175 ||| | ||||||||| ||| | || || ||| ||||| || | | ||||| Sbjct 52238 CCAGTTAGCCTTCTTCTGC-ACACAGGGAATGGTCTCGATAGCACGCAGAAGGTGGTCCT 52296 Query 160176 GCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACAT 160235 ||| | |||||||| || | || ||| |||||| | || | ||| | | Sbjct 52297 TCTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGAATGT 52356 Query 160236 TTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTG 160295 | || ||||| ||||| ||| |||||| | || || | ||||||||| | Sbjct 52357 TCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCACCTGCACCTCATTGC 52416 Query 160296 TGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACA 160355 |||| | |||| || | || || | |||||| ||| || |||||||| | || Sbjct 52417 TGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCGAAGAAAGCGAGCA 52476 Query 160356 CGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTT 160415 |||| ||||||||| | ||||| | |||| || |||||| ||| ||| | Sbjct 52477 CGTGCTTGATGAAATGGCGCTCGTTATCCGTGAG---GTTGCCCCAGTCCTTCAGGTCGT 52533 Query 160416 GGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACAT 160470 | | | ||||| ||| || || |||| || ||||| || | |||||||| Sbjct 52534 GCACGAGATCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTCTTGTACAT 52588 >seq21 Length=128421 Score = 96.9 bits (106), Expect = 6e-15 Identities = 283/430 (66%), Gaps = 7/430 (2%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||||||||| |||||||||| | || || ||||| | ||||||| ||| Sbjct 36426 TTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAATGGATTC 36485 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 ||||||| || ||| | | || || | |||| | |||||||| || || Sbjct 36486 TTCACGTTGTAAATCTTGGACACACCCAGTGAGTAAAGCAGGCGATCTGCCACGAACTCA 36545 Query 159770 ATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGAC 159829 ||||| ||||| || | |||| || || | || | || ||||| | || || Sbjct 36546 ATGTACTGGCACATGAGCGCTGAGTTCATGCCGATCAACTCCACAGGGAGAGAGTCGCAC 36605 Query 159830 AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACCC 159888 | ||||| | |||||| ||| || ||| | || | || | || || | | Sbjct 36606 ACGAACTCGTGCTCAATGGTGACAGCGTCGCGGATGATTT-CGTGTACGCGGCTCTCCGG 36664 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 | ||||| || | | | | ||| |||||| || || || ||||| |||||| Sbjct 36665 CAGCTTGTTCACGA---GCTTCGAGTACATGAGGCAGGCGAAATCCGTGTGCATTCCCTC 36721 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 |||||| ||| | |||||| || | | |||| || ||||||| || ||| ||||| Sbjct 36722 GTCCCGGCTGATCATCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAG 36781 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || || | ||| || | | | | || ||||| |||||||| || || ||||||| Sbjct 36782 CCAGAAGATCG-AGCAGAACGATCCCGAGAAGAAGATGCCCTCCACTGCTGCGAACGCCA 36840 Query 160068 CGAGCCTCTC 160077 |||| ||| Sbjct 36841 GCAGCCGCTC 36850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795127687630080