Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq692 158 1e-33 seq89 136 4e-27 seq165 113 5e-20 seq42 98.7 1e-15 >seq692 Length=12785 Score = 158 bits (174), Expect = 1e-33 Identities = 151/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 10993 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 10934 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | ||| | | ||||||||| ||| |||| ||||| | | | Sbjct 10933 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 10875 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 10874 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 10815 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 10814 AAGATCTGCAT 10804 >seq89 Length=77706 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||||||| || || || || Sbjct 73657 CGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCG 73716 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| ||||| ||||||||||| | || | || ||||||| Sbjct 73717 TCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 73776 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| ||| | ||| | | | | ||| || ||||| |||| |||||| Sbjct 73777 TCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGAT 73835 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || ||||||| || || || ||||| |||||| Sbjct 73836 CGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 73872 Score = 134 bits (148), Expect = 2e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | ||| |||||| ||||| ||||||||| || || || || Sbjct 73429 CGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCG 73488 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| ||||||||||| | || | || ||||||| Sbjct 73489 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTG 73548 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| ||| | ||| | | | | ||| || ||||| |||| |||||| Sbjct 73549 TCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGAT 73607 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||||| || || |||||||| ||||| Sbjct 73608 CGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73643 Score = 131 bits (144), Expect = 2e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || || || || | || ||||| |||||| || | || |||||| ||||| |||||| Sbjct 73183 TAGTTTCCGCCACGTAGACGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAG 73242 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 ||| | || || |||| || ||||||||||| ||||| |||| ||||||||||| Sbjct 73243 TCGCTCAACGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCA 73302 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGA 46539 | || | || |||||||||| ||||||| ||| | ||| | | | | ||| || Sbjct 73303 GGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGG 73361 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||| || || ||||||| || || |||||||| ||||| Sbjct 73362 CTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73415 >seq165 Length=56023 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||| |||||||| | || || Sbjct 52390 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52331 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| ||||||||||| | || | || |||||||||| Sbjct 52330 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52271 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| | ||||| ||| | | | | || || ||||| || | || || || | Sbjct 52270 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 52212 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||||| ||| || || ||||| ||||| Sbjct 52211 TACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 111 bits (122), Expect = 2e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| ||||| |||||||| |||||||| | || || Sbjct 51934 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 51875 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| ||||||||||| | || | || |||||||||| Sbjct 51874 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 51815 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| | ||||| ||| | | | | || || ||||| || | || || || | Sbjct 51814 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCT 51756 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| || || || || || ||||| ||||| ||| Sbjct 51755 TGCCAGTGAGGGTCTTGACGAAGATCTGCATCTTG 51721 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| || || |||||||| |||||||| | || || Sbjct 52162 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52103 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| ||||||||||| | || | || |||||||||| Sbjct 52102 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52043 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| | ||||| ||| | | | | || || ||||| || | || || || | Sbjct 52042 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 51984 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||||| ||| || || ||||| ||||| Sbjct 51983 TACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 >seq42 Length=107536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||| ||||| |||||||| || |||||||| | Sbjct 97399 ACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 97458 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||| ||||| |||| ||||||||||| Sbjct 97459 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 97500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565218842751360