Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 228 8e-55 seq21 224 1e-53 seq165 132 5e-26 seq692 122 9e-23 seq89 111 2e-19 seq42 100 3e-16 >seq7 Length=190069 Score = 228 bits (252), Expect = 8e-55 Identities = 415/602 (69%), Gaps = 4/602 (1%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || || ||| |||| ||||||||| | | |||||| ||||| ||| ||| Sbjct 52043 GCACGCGAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAG 52102 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || |||||||||||||| || |||||||| || |||| | ||| ||||||||||| Sbjct 52103 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGAA 52162 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | |||||| || || |||||||| ||||| ||||| || | | | | || || Sbjct 52163 AATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCCGCGTAGGATGACACAC-GCGGGT 52221 Query 133074 GAT-CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 | ||| | || ||||| | ||||| | | || || || || || ||||| || Sbjct 52222 CACACCACCTGAGGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGCAC 52281 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACA 133192 || | || ||||| | | | ||| ||||||||||| ||| || | Sbjct 52282 GCAGAAGGTGGTCCTTCTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTAGA 52341 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 |||||||| | |||||| ||||| || || |||||||| ||||| || || || || Sbjct 52342 CCTCCGAGTGAATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCA 52401 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 ||||||| || | ||| | | |||| || ||||| ||||| ||||||||||| | Sbjct 52402 CCTGCACCTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAG 52461 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGT 133372 |||| || || ||||||||||||||||||||||||||||| || | | | |||||| Sbjct 52462 CGAAGAAAGCGAGCACGTGCTTGATGAAATGGCGCTCGTTATCCGTGAGGTTGCCCCAGT 52521 Query 133373 CGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 | | || | || || || || | |||||| | ||||| || || ||||| || || Sbjct 52522 CCTTCAGGT-CGTGCACGAGATCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTC 52580 Query 133432 TTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 |||||||| ||||| || | || ||||| || | ||| || ||| |||| || Sbjct 52581 TTGTACATCTGCCACACCTCATGCTCCTGGATGGGGAAGAGCACGAAGCGGTGGGGATTC 52640 Query 133492 TC 133493 || Sbjct 52641 TC 52642 >seq21 Length=128421 Score = 224 bits (248), Expect = 1e-53 Identities = 466/688 (68%), Gaps = 22/688 (3%) Strand=Plus/Plus Query 132814 TGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCG-TT 132871 ||||| |||| ||| |||||| || |||||| ||||| || ||| ||| | || Sbjct 36615 TGCTCAATGGTGACAGCGTCGCGGATGATTTCGTGTACGCG----GCTCTCCGGCAGCTT 36670 Query 132872 G--CACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 | ||| | | | | |||| | ||| || || || |||| |||||||||| | Sbjct 36671 GTTCACGAGCTTCGAGTACATGAGGCAGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCT 36730 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 || | ||||| ||| | | || |||||||||||||| || |||||||| || || Sbjct 36731 GATCATCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 36790 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | | ||| ||||| ||||||| |||||| || || ||||| |||| ||| ||||| Sbjct 36791 CGAGCAGAACGATCCCGAGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTC 36850 Query 133050 GCCGAACGTGGCTTCTTTGCTGGCGATC----CAGCGCAGCGCCCATTCGGCCTTTTCTT 133105 | | | | | | |||| || | || ||||| | ||||| | || Sbjct 36851 CGGGTAAGAAGACACAC----GAGGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTT 36906 Query 133106 TGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCA 133165 || ||||| ||||| |||||||| || || | |||||| | | | | Sbjct 36907 GCACACACGGGATCGTCTCGATGGCACGCAGCAGATAATCTTTCTCGACTGTGTCCTTGA 36966 Query 133166 CGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAA 133225 ||| |||||||| || || || | ||||||||| | ||||| ||||| || || | Sbjct 36967 TGTACGTGTCGATCAGCAGGGAGTAAACTTCCGAGTGGATATTCTCAATGGCTATCTGGA 37026 Query 133226 AGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGAT 133285 | ||||| ||||| || |||||| |||||| | || | ||| | | | || | Sbjct 37027 AACCGTAGAAGCAGCGGGCCTCGGGCACCTGGATCTCATTGCTGAAGTTCATGGCTAGGT 37086 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | ||||| ||||| ||||| || || ||||||||||| ||||||||||||||||| |||| Sbjct 37087 TCTCGTTAACGATACCGTCACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAAGTGGC 37146 Query 133346 GCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||| ||||| ||| ||| |||||||| | ||| | |||||| | |||| Sbjct 37147 GCTCATTGTCCGTCA---GCTTGGCCCAGTCGTTCAGGTCGTGTACCAGGTCGAGTTCCT 37203 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTA 133462 || | ||||| || || ||||||||||| |||||||| ||||| ||| | || | Sbjct 37204 CGGCAGTCCAGAAAGATGCCTCGGCTTTCTTGTACATCTGCCACACGTCGTGCTCCTGGA 37263 Query 133463 TGGGAAAAATCACAAACCGGCGGGGGTT 133490 |||| || | ||| || ||| |||||| Sbjct 37264 TGGGGAAGAGCACGAAACGGTTGGGGTT 37291 >seq165 Length=56023 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| || || ||| ||||||| ||| | Sbjct 51722 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCG 51781 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | |||| | || |||| || | ||||| ||||| || || | || Sbjct 51782 TCGGATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 51840 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| || | ||||| || | ||||| Sbjct 51841 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTA 51900 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| |||||||||| ||||||| || || | |||||| Sbjct 51901 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 51952 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| ||| | | Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || |||| || | ||||| ||||| || || | ||||| Sbjct 52241 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52299 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52300 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52359 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| ||||||| || || | ||||| Sbjct 52360 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGG 52407 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| ||| | | Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || |||| || | ||||| ||||| || || | ||||| Sbjct 52013 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52071 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52072 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52131 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| |||||||||| ||||||| || || | |||||| Sbjct 52132 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 52180 >seq692 Length=12785 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 10804 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 10863 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| || ||||| |||||| ||||| Sbjct 10864 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGAAT-CCCGCCTGACCA 10922 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 10923 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 10982 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 10983 CATCCAGAAGG 10993 >seq89 Length=77706 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || || ||||| | ||||| ||| | | Sbjct 73415 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73356 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 73355 GACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 73297 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| || | ||| ||||| |||||||| |||| || || | | ||||||||| Sbjct 73296 GCAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACAA 73237 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || || ||||||||||| | | ||||| Sbjct 73236 CATCCAGAAGGAGTCGACTCTTCACCTGGTGCTGCGTCTACGTGGCGG 73189 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || || | ||||| || || ||||| | ||||| ||| | Sbjct 73875 AACAATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCC 73816 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||| | | |||| | || | || || | ||||| ||||| ||||| | | Sbjct 73815 GTCGGACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTG 73757 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| | || | ||| ||||| |||||||| |||| || || || | ||||| Sbjct 73756 ACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACT 73697 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||| || || |||||||||| || | || ||| Sbjct 73696 ACAACATCCAGAAGGAGTCGACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 73644 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || || ||||| | ||||| ||| | | Sbjct 73643 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73584 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 73583 GACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 73525 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| || | ||| ||||| |||||||| |||| || || || | ||||||||| Sbjct 73524 GCAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAA 73465 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||||||||| || | || ||| Sbjct 73464 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 73416 >seq42 Length=107536 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 97512 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 97453 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| |||| ||||| ||||||||||| || | Sbjct 97452 ACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 97393 Query 38466 GGCGG 38470 || || Sbjct 97392 GGTGG 97388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155494021120