Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq439 226 3e-54 seq521 100 3e-16 seq51 98.7 1e-15 seq7 96.9 4e-15 >seq439 Length=25150 Score = 226 bits (250), Expect = 3e-54 Identities = 1181/1864 (63%), Gaps = 42/1864 (2%) Strand=Plus/Plus Query 109376 TAAATTGGATTG-GTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGA 109434 |||| ||||| | ||| |||||||| | ||| | || ||||| ||||| ||||| Sbjct 17464 TAAACTGGATGGCGTC-AGCTTTCGGGCGCCCGCGCATGTAGTACATGCCCGTCTTGAGC 17522 Query 109435 CCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATA 109494 || |||||| ||||| | ||||| || | ||| ||| || ||||| | || Sbjct 17523 CCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTGCTAATCGTCGGGTCGGCGATG 17582 Query 109495 AACAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATG 109554 | ||| | ||||||| ||| ||| | ||||| || || | || ||| | Sbjct 17583 TGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGCCACGGTCGGCAGACAGGTCCAGC 17642 Query 109555 ATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 | | ||| || | || ||||| || ||||||||| | ||||| | || || || Sbjct 17643 ACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATT 17702 Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGAC 109674 || | ||| || | ||||| || | |||| || | | || ||| || | Sbjct 17703 ACCTTCACGTTCTGCACGGAGCCGCCGTCGTTCAGGATCTGGTTGCGCACCTCCGGCGTC 17762 Query 109675 CAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCA 109734 |||| ||| | | | || |||| | || | |||||| || | || || || Sbjct 17763 CAGATACCCAGATCGATCAGCTCGTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCT 17822 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 ||||| || ||| ||| ||||| | |||||| || |||| | |||| |||||||| Sbjct 17823 GCAAGCACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCC 17882 Query 109795 AGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCC 109854 ||||| || ||||| ||||| || ||||||||||||| || || ||| || ||||| Sbjct 17883 AGGATCTGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCG 17942 Query 109855 TTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCA 109914 | | | | || ||| | | |||| || | | ||| | | ||| | Sbjct 17943 TGCTTGATCACGTTCTCCTTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGCGTCACG 18002 Query 109915 CCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCG 109974 | ||||||| || || | ||||||| ||| || || |||| ||| |||| Sbjct 18003 C---CCCACATGTCGAACTGGAAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCA 18059 Query 109975 TACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTC 110034 || | |||| ||| || | ||| || | ||| | | | | || || ||| Sbjct 18060 TAGGGCCCCAACTCCTTCGCAATCTCCATCGACGTCTCCATGGAACCGTAGTAGATGGTC 18119 Query 110035 TCAAAAATATGAGCATTCATGAG---GCGAGACTCTTCACAGTCGAAGGGA-AGACCACA 110090 || || || | || |||| || | || | | ||||| ||| || || Sbjct 18120 TCGAAGATGT---TCTTGTTGAGTTCGCTGGCCTGCTGGCTCTCGAACGGATAGTTCA-T 18175 Query 110091 AAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTT 110150 ||||| ||| | || || |||||||||||||||| ||| | |||||| || |||||| Sbjct 18176 CAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTT 18235 Query 110151 AGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTT 110210 || ||||| | |||||||| ||||| |||||||||| || ||||| Sbjct 18236 GGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACG 18295 Query 110211 CGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270 |||||| ||| | || | || || | ||| ||| | | |||| Sbjct 18296 CGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAACTCCCTCCTCC----- 18350 Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330 || | |||||||| || | ||| || | ||||||||||| || || || Sbjct 18351 -ACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGT 18409 Query 110331 GTATTCCAAAATTTCCGTACACAAGT---TGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 ||| |||| | || ||||||| |||||| || ||||| ||||| ||| Sbjct 18410 GTACTCCATCACCTCACAGCACAAGTTACTGGAAC---GGATCGTACCCAGGTTCTGCTG 18466 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || |||||| ||| ||| ||||| ||||||||| | || ||| ||||| |||| Sbjct 18467 GTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTG 18526 Query 110448 TGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAG--TTGCGTTAGCGAGAC 110503 | | || || || || ||| | || |||| || | ||||| ||| | | Sbjct 18527 GGCGTCAAGGATCGCGAACC--ACAGCTGCTGGGCGTTGATGGTCTTGCG--AGCACGCC 18582 Query 110504 CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGA 110562 |||||| ||||||||| ||| | | |||||| || | || | ||| || | || Sbjct 18583 CTTCCTTCTCGTACTTCTCGTAGAGGGTCTCAAACTCTTCACCCCAGCAC-TCGTAGAGT 18641 Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATG 110622 || || | | |||||||| | ||| || ||| |||| ||||| |||||| Sbjct 18642 CCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATG 18701 Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCACC 110681 || || || || | ||||| || |||| | |||||| ||| | | | || | ||| Sbjct 18702 AAGAGATCGGGCACCCACAATGCGTAGAACAAGTCACGAGCACGGTGGAGC-TCGTTACC 18760 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 || || ||| || |||| || || | | ||| | |||||| || || || |||| Sbjct 18761 GTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGAT 18820 Query 110742 AGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 |||| ||| ||||| || | || |||||| || ||||| || || ||||||| Sbjct 18821 GGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAA 18880 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858 ||| || | ||| || |||||||||| ||| |||||| || || | || | || Sbjct 18881 GACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGTT 18940 Query 110859 ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGC 110918 | ||||| || | ||| ||| || |||||||| || |||||||| || || Sbjct 18941 CGTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGC 19000 Query 110919 ACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAA 110978 ||||| | | || | || || || || ||||| || ||| | || | || || Sbjct 19001 ACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAA 19060 Query 110979 GCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAAT 111038 |||||| |||| || || || || || || |||||||| || || || || || ||| | Sbjct 19061 GCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGT 19120 Query 111039 GAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGT 111097 ||| | || | || |||||| | ||| || || || || | | || | || Sbjct 19121 GAA-AAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCTTGT 19179 Query 111098 GAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157 | ||||| | || || ||||| | ||| | ||| || ||| | | || |||| | Sbjct 19180 GGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCATTGA 19239 Query 111158 CACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCAC 111217 |||| ||||| | |||| | |||||||| || ||||| | | ||||| || | Sbjct 19240 CACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCCC 19299 Query 111218 GATC 111221 | || Sbjct 19300 GGTC 19303 >seq521 Length=19740 Score = 100 bits (110), Expect = 3e-16 Identities = 320/490 (65%), Gaps = 31/490 (6%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| || || || || || | ||| | || |||||||| ||||||| Sbjct 3521 ATCTGTCGGTCGAATCGTCCAGGACGCAGGATAGCTTTGTCCAGAATATCAGCACGGTTC 3462 Query 11557 GTAGCGGCAATGACTACAATGCCAGT-CTCATTGTCGAAACCGTCCATTTCTGTGAGAAG 11615 ||| | |||| || || | || ||| || || || ||||| || || || Sbjct 3461 GTACCAGCAAGAACCACCACACCTTCGCTCGA-GTTAAATCCATCCATCTCGACCAGCAG 3403 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAAC------- 11668 |||||| | ||| | ||||||||| ||||| |||||| | ||| Sbjct 3402 CTGGTTCAACGTGTTTTCACGCTCGTCGTT---------ACCACCCGA-GAAGTTGCCCT 3353 Query 11669 -GCTTCTTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGG 11722 ||||| | | | || || || || |||||||| || || || || || ||| | Sbjct 3352 TGCTTCGTGCACGCGCCACGGCATCGATTTCATCGATAAACACAATGCATGGAGCGTTCG 3293 Query 11723 CACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAA 11782 | || |||| | ||| | ||||| ||||| || || ||||| || |||||||| | Sbjct 3292 CGCGAGCCTCCTTGAACAAGTCACGCACACGAGACGGACCCACACCGACAAACATCTCGA 3233 Query 11783 CGAAGTTTGCGGCAGAACA-CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGA 11841 ||| | | | ||| ||||| ||| || || | | ||||||||| |||| Sbjct 3232 TGAAATCCGAACCGGAAATGCTGAA-GAACGGCACGCTCGCCTCACCAGCAGTGGCCTTG 3174 Query 11842 GCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTG 11901 || || || || ||||||||||| || | ||| | || || || || |||||||||| Sbjct 3173 GCCAGCAGCGTTTTACCCGTACCGGGCGGGCCAACAAGCAGAGCACCCTTGGGGATCTTG 3114 Query 11902 GCACCA--CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTT 11959 || ||| || | || |||||| | || ||||||||||| | |||| || | Sbjct 3113 GCGCCAAGCTCCGTAA--AGCGCTTCTGGTTGCGAAGGAAGTCCACGAACTCCATAATCT 3056 Query 11960 CCTCCTTGGC 11969 ||| |||||| Sbjct 3055 CCTTCTTGGC 3046 >seq51 Length=98043 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG-TTC 11735 |||| ||||||||||||||||||||| | || ||||| || || | | || ||| || Sbjct 62846 CCGATAGCGTCAATCTCATCGATGAAGATAATGCACGG-TGCTTTCCGCTTGGCTGACTC 62788 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| ||||| || |||||||| ||| ||||||| | || | | | Sbjct 62787 GAAGAGGTCACGCACACGACGTGCGCCAACACCGACGTACATCTCCTCAAACTCCGATCC 62728 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 || | | | |||||| ||| || || || || || || || || || || ||||| Sbjct 62727 GGACGAGTAGAAGAAGGGCACACCAGCTTCGCCCGCAATAGCACGGGCCAGCAGCGTCTT 62668 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||||||||||| | |||| || || |||| Sbjct 62667 ACCCGTACCAGGCGGGCCAGTCAGCAGCACGCC 62635 >seq7 Length=190069 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/171 (73%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 119529 ATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATG 119588 |||||||| || ||||| || ||||||||||| || | ||||| ||||| |||||| Sbjct 52080 ATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATG 52139 Query 119589 GCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCA 119648 | || || ||| |||||||| ||||||||||| |||||||| | |||||||| Sbjct 52140 GAGCAGAAGGATCCCGAAAAGAAAATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCC 52199 Query 119649 GCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTTGGCCTT 119695 || ||| || | | ||| ||||| |||| |||||||| ||||| Sbjct 52200 GC-GTAGGATGACACACGCGGGTCACACCACCTGAGGGCCCAGTTAGCCTT 52249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955621430400