Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq492 147 2e-30 >seq492 Length=38611 Score = 147 bits (162), Expect = 2e-30 Identities = 394/592 (67%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 ||||| || ||||| | ||| || || || || || || | | ||||||||||| || Sbjct 26290 AGCGGCTCAACGTGGTTCAGATACACATGCGCATCGCCAATGACATGGACAAACTCGCCA 26231 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGTAGCTGGCGATGT 29920 || | ||||| | || || |||| || || |||| || || | ||| |||||||||| Sbjct 26230 GGCTTCAGCCCAGCCACTTGCGCCACCA-GT-CGTGTAAGCAGTGCGTAACTGGCGATGT 26173 Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC 29980 | || || || || || |||||||| |||| | ||||| | ||| || || | ||| | Sbjct 26172 TGAATGGCACTCCAAGTCCCATGTCGGCCGAACGTTGGTACATCTGGCAGGACAACTCCC 26113 Query 29981 CGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGT 30040 | || |||||| ||||| || | ||||||| ||||| | ||||| | | | Sbjct 26112 CATCAGCCACGTAGAACTGGCAGAACATGTGGCAGGGAGGCAACGCCATCTCGTTAAGAT 26053 Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTCCTGATGAGG 30099 | |||||||| || ||| | || | | ||| ||| || || | || | Sbjct 26052 CAGCAGGGTTCCACGCCGACAACACAATTCTGCGGTCAGTTGGATTCGTACGCAATTTTG 25993 Query 30100 T--CCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCC 30156 | ||| || || ||||| ||||| || || ||||| || || ||| ||| Sbjct 25992 TGATCAC----TTCAGCAAGCTGGTCCACACCTTGACCAGAGTAATCAGCGTGCATATCC 25937 Query 30157 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30216 ||||||| || || || || | ||||||||| ||||| ||||| || ||||| || || Sbjct 25936 GTGTACTTGGCACCAAAGTGACGCCACTGGAAACCGTAGACCGGCCCGAGGTCCCCAACT 25877 Query 30217 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 || | | || | || | |||| | | | |||| || |||||| |||||||||| Sbjct 25876 TCTCGATCCTGTAGTCCTCGACTGTCGAGATACTCTCGAGATCCGTTGCCGTCCCAGATG 25817 Query 30277 TTTACCCCCTTCTCGGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 30335 | | |||||| ||| | | || | | ||| || || | ||||||||||| Sbjct 25816 TGAATTTCCTTCTGCTGCAGCGTGTGTGCA-CTAGTGTCGCCACTAATAAACCACAGCAG 25758 Query 30336 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30387 |||||| | || | ||| || || ||||||||||| || | |||||| Sbjct 25757 CTCCTCAGCTACACCACGCCAGAAAACTCTCTTGGTCGTCAGCAACGGAAAC 25706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408603815285264