Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq439 185 1e-41 seq21 105 8e-18 >seq439 Length=25150 Score = 185 bits (204), Expect = 1e-41 Identities = 484/725 (67%), Gaps = 15/725 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| || | | ||||| || |||| ||| | |||| | || ||||| | Sbjct 19300 CGGGACTTCGAGTACGACTACTTCGGCTTCAAGACCTTGGAGAGAGGATACCTCTTC--C 19243 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || |||||| | ||||| || || | ||| | ||||| || || |||| | Sbjct 19242 GTGTCAATGGCAAAGTGGTGGAACGTCCGCAACAGATGATTATGCGCGTGGCTCTCGGTA 19183 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304 ||||| | ||||| | | | ||||||| ||||| |||||| || | || | Sbjct 19182 TCCACAAGAGTGACATCAAGGCAGCTCTGGAGACGTACGAGCTGATGTCGCAGAAGTTT- 19124 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 |||| |||||| || || || || |||||||||||||||||| ||||||| ||||| | Sbjct 19123 TTCACTCACGCTACCCCGACGCTGTTCAATGCTGGTACACCACGACCGCAATTGTCCTCT 19064 Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 |||||||| | || | |||| ||||| ||| | || ||||| | || | | | || Sbjct 19063 TGCTTCCTGTTGGCGATGCAGGATGACTCGATCGAGGGCATCTACGACACCTTGAAGCAG 19004 Query 75425 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 75484 ||||| ||||| ||||||||||| |||||||| || || || || | | || Sbjct 19003 TGTGCCTGCATCTCCAAGTGGGCTGGAGGTATTGGCATTAGTATGCACAATATCCGTGCG 18944 Query 75485 AATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 75543 | || | || || || || || |||||| || |||| ||||| || ||| | | Sbjct 18943 ACGAACAGCT-ACATCCGCGGCACGAATGGTTCCTCCAATGGAATTATCCCCATGTTGAG 18885 Query 75544 CGTATTTAACGCCACAGCGCGCTATGTAAATCA---AGCGGGGCGTCGCAAGGGGTCCAT 75600 || || || | || || ||||| || | || || || |||||||| ||| | Sbjct 18884 AGTCTTCAATGATACCGCTCGCTACGTGGACCAGGGAGGAGGCAAGCGCAAGGGCTCCTT 18825 Query 75601 CGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAA 75660 ||| ||||| |||| || ||||| |||||| | | |||||||| || | || || Sbjct 18824 CGCCATCTACCTGGAGCCGTGGCACGCCGATGTGTTCGAGTTCCTGGATCTCCGCAAGAA 18765 Query 75661 CCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACC 75719 || ||| ||| || | | ||| | | || | || | | ||||| | || || | Sbjct 18764 TCACGGTAACG-AGCTCCACCGTGCTCGTGACTTGTTCTACGCATTGTGGGTGCCCGATC 18706 Query 75720 TTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCAC 75779 | |||||||| |||| |||| ||| | ||| | | |||||||| | | || | Sbjct 18705 TCTTCATGAAAAGGGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCTAATGAAGCTC 18646 Query 75780 CAGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG 75838 | || |||| ||| || | |||||| |||||||| |||||||| ||||| || || Sbjct 18645 CTGGACTCTACGAGTGCTG-GGGTGAAGAGTTTGAGACCCTCTACGAGAAGTACGAGAAG 18587 Query 75839 GAGGG 75843 || || Sbjct 18586 GAAGG 18582 >seq21 Length=128421 Score = 105 bits (116), Expect = 8e-18 Identities = 348/536 (65%), Gaps = 30/536 (6%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || ||| | | ||||||||||| ||||| | | |||| ||| Sbjct 36931 GCCATCGAGACGATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTGTGAT 36872 Query 65056 ACAAAGTCTCGCTCCTTCGCCG-AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || | || ||| ||| |||| || | ||||| || |||||||| ||||| Sbjct 36871 CCTC-GTGTGTCTTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGGGCATCTT 36813 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 36812 CTTCTCGGGATCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCT 36753 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC----- 65229 ||||||| || || | || ||| || ||||| | ||| ||| || ||| Sbjct 36752 CAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAATGCACACGGATTTCGCCTGCCT 36693 Query 65230 ---GT----GGAGCTCTTCAAGACTTTGCGTAATAGACCCACTAC-CGAAACTATCCACG 65281 || | ||||| | || | ||| | || || ||| ||||| |||| | Sbjct 36692 CATGTACTCGAAGCTCGTGAACAAGCTGCCGGAGAG-CCGCGTACACGAAATCATCCGC- 36635 Query 65282 CCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT- 65340 || || || |||||| | | |||| | | ||| | ||||| ||| Sbjct 36634 -----------GACGCTGTCACCATTGAGCACGAGTTCGTGTGCGACTCTCTCCC-TGTG 36587 Query 65341 AATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGT 65400 | | ||||| |||||||| | | |||| | |||||||||||| ||| | ||||| Sbjct 36586 GAGTTGATCGGCATGAACTCAGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGATCGC 36527 Query 65401 CTCCTCAAACAAGTTGGGGTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATG 65460 || || | | | || ||| | |||| |||| |||||||||||| |||| ||| Sbjct 36526 CTGCTTTACTCACTGGGTGTGTCCAAGATTTACAACGTGAAGAATCCATTCGACTGGATG 36467 Query 65461 GAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || | || || | || ||||| ||||| || ||||| || || || || || Sbjct 36466 GACATGATCTCGCTCCAGGGCAAGACAAACTTTTTCGAGAAACGGGTCGGTGAGTA 36411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596548958691840