Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq165 86.0 5e-12 >seq165 Length=56023 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || ||||| || | || ||||| || |||||| |||| |||||| Sbjct 51722 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCG 51781 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | ||| | | || || || |||||| ||||| || ||| | || || Sbjct 51782 TCGGATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGAC 51841 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || || ||||||||||||| | | || || || ||| Sbjct 51842 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTAC 51901 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || ||| ||||| ||||| | | ||||| || || Sbjct 51902 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGG 51951 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || || || || |||||| | || |||||| Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| | ||| | | || || || |||||| ||||| || ||| | || || || Sbjct 52013 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52072 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||||| | | || || || |||||| Sbjct 52073 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52132 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || ||| ||||| ||||| | | ||||| || || Sbjct 52133 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGG 52179 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || || || || |||||| | || |||||| Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| | ||| | | || || || |||||| ||||| || ||| | || || || Sbjct 52241 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52300 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||||| | | || || || |||||| Sbjct 52301 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52360 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || || || || || ||| ||||| ||||| | | ||||| || || || Sbjct 52361 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGGTAA 52410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412827672788624