Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq165 132 3e-26 seq692 129 4e-25 seq89 111 1e-19 seq42 89.7 3e-13 >seq165 Length=56023 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||||||||| ||||| || |||| |||| Sbjct 52164 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCC 52105 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 52104 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 52045 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | || || || | ||| || |||| ||| || ||| Sbjct 52044 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTC 51985 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| | ||||| || |||||||||||| Sbjct 51984 TTACCCGTCAACGTCTTGACGAAGATCTGCATG 51952 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| |||| Sbjct 51936 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 51877 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 51876 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 51817 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | || || || | ||| || || | ||| || ||| Sbjct 51816 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTC 51757 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 51756 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| |||| Sbjct 52392 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 52333 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 52332 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 52273 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | || || || | ||| || |||| ||| || ||| Sbjct 52272 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTC 52213 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| | ||||| || |||||||||||| Sbjct 52212 TTACCCGTCAACGTCTTGACGAAGATCTGCATG 52180 >seq692 Length=12785 Score = 129 bits (142), Expect = 4e-25 Identities = 148/197 (75%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 10993 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 10934 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | || |||||||| | ||||| || ||||| || Sbjct 10933 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 10877 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 10876 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 10818 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 10817 ACAAAGATCTGCATGAT 10801 >seq89 Length=77706 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| ||||| || | || | || Sbjct 73431 CAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTC 73490 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 73491 CTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 73550 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | || || || | ||| || || | || || || Sbjct 73551 CTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 73610 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| ||||||||||||||| Sbjct 73611 CTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 73644 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| ||||| || | || | || Sbjct 73659 CAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTC 73718 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||||| ||| |||||||| | || | ||||||||||| Sbjct 73719 CTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 73778 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | || || || | ||| || || | || || || Sbjct 73779 CTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 73838 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | ||||| || ||||||||||| Sbjct 73839 CTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 73871 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||||| || ||||||||| ||||| ||||| | | || | || Sbjct 73203 CAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGACCGTC 73262 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 73263 CTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 73322 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | || || || | ||| || || | || || || Sbjct 73323 CTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 73382 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| ||||||||||||||| Sbjct 73383 CTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 73416 >seq42 Length=107536 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 97402 CAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTC 97461 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| || ||||||||||| || |||||||| Sbjct 97462 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 97500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325681812753392