Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq439 114 3e-20 >seq439 Length=25150 Score = 114 bits (126), Expect = 3e-20 Identities = 328/500 (66%), Gaps = 7/500 (1%) Strand=Plus/Minus Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 |||| ||| | || | |||| || | || ||||| ||||||||||| || || || | Sbjct 18921 CGAATGGTTCCTCCAATGGAATTATCCCCATGTTGAGAGTCTTCAATGATACCGCTCGCT 18862 Query 110725 ATGTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 | ||| | || ||| || ||| | || ||||| || || ||||| || || || |||| Sbjct 18861 ACGTGGACCAGGGAGGAGGCAAGCGCAAGGGCTCCTTCGCCATCTACCTGGAGCCGTGGC 18802 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 | | ||| | || || ||| | || || || || ||||| || || || | | Sbjct 18801 ACGCCGATGTGTTCGAGTTCCTGGATCTCCGCAAGAATCACGGTAACGAGCTCCACCGTG 18742 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | ||||| || || || ||| ||||| | | ||| | ||||||||| | || | | | Sbjct 18741 CTCGTGACTTGTTCTACGCATTGTGGGTGCCCGATCTCTTCATGAAAAGGGTGGAGGCCA 18682 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAA 110961 |||||| |||| | | | |||||| || ||||||| || | || | || Sbjct 18681 ATGGCAAGTGGAGTTTGTTCTGTCCTAATGAAGCTCCTGGACTCTACGAGTGCTGGGGTG 18622 Query 110962 AAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA-ACAAATT 111020 |||||||||| ||| ||||| || || || || ||||| |||||| || | | Sbjct 18621 AAGAGTTTGAGACCCTCTACGAGAAGTACGAGAAGGAAGGGCGTGCTCGCAAGACCA--T 18564 Query 111021 CCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 | | || || | || |||||| |||||||| | || ||||||| || |||| Sbjct 18563 CAACGCCCAGCAGCTGTGGTTCGCGATCCTTGACGCCCAGATTGAAACGGGTGTGCCTTT 18504 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || | || || || ||| |||||||| || || ||| | || || || Sbjct 18503 CATGCTCTACAAGGACGCAGCTAACCGCAAATCCAACCAGCAGAACCTGGGTACGATCCG 18444 Query 111140 GTCTAGTAATTTGTGCTGTG 111159 || ||||| |||||||||| Sbjct 18443 TTCCAGTAACTTGTGCTGTG 18424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186770709684048