Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq21 114 2e-20 seq439 91.5 2e-13 >seq21 Length=128421 Score = 114 bits (126), Expect = 2e-20 Identities = 367/563 (65%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||||||||| || || | ||||| || | || || | ||||| || | Sbjct 36688 ACATGAGGCAGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGA 36747 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | |||| |||||||| || || ||||| |||||||| || || | |||| || ||||| Sbjct 36748 AGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCG-AGCAGAACGATCCC 36806 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||||||||| || |||||||| || || | || | ||| |||| | || Sbjct 36807 GAGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACA 36866 Query 39788 TTATGTAT----CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | | || |||| | | ||||| | || ||||| | ||||| || || || || Sbjct 36867 CGA-GGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTC 36925 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 || ||| | ||||||| ||| || | | || || | || || || || | ||| Sbjct 36926 GATGGCACGCAGCAGATAATCTTTCTCGACTGTGTCCTTGATGTACGTGTCGATCAGCAG 36985 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | ||| || ||||| || ||||| || ||||| || ||||| || || | || Sbjct 36986 GGAGTAAACTTCCGAGTGGATATTCTCAATGGCTATCTGGAAACCGTAGAAGCAGCGGGC 37045 Query 39964 TTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 || | | || | ||| || || || | || | || || || || || || Sbjct 37046 CTCGGGCACCTGGATCTCATTGCTGAAGTTCAT--GGCTAGGTTCTCGTTAACGATACCG 37103 Query 40022 TCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT 40081 ||||| || || ||||| || | || || || || || | |||| | |||| Sbjct 37104 TCACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCATTGTCCGTCAGC 37163 Query 40082 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC 40141 || |||||| || | || | | | || | ||| || || ||||| || || ||| Sbjct 37164 TTGGCCCAGTCGTTCAGGTCGTGTACCAGGTCGAGTTCCTCGGCAGTCCAGAAAGATGCC 37223 Query 40142 TCTGCCTTTTTGTACATGTTCCA 40164 || || || |||||||| | ||| Sbjct 37224 TCGGCTTTCTTGTACATCTGCCA 37246 >seq439 Length=25150 Score = 91.5 bits (100), Expect = 2e-13 Identities = 779/1244 (63%), Gaps = 28/1244 (2%) Strand=Plus/Plus Query 69009 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT-TGTGCTTCTAGACTATCGA 69067 |||||| || || || ||||| || ||||| ||||| || || || || | || |||| Sbjct 18104 ACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTGG-CTCTCGA 18162 Query 69068 ATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTC 69127 | ||||| | | ||||| || || || |||| |||||||| || ||||||| || | Sbjct 18163 ACGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGC 18222 Query 69128 TATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 || | | | || || ||| | ||| || | || || || || | || || | Sbjct 18223 GGTGGCGCATGTTGGA-CTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACC 18281 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAA-TCAAATCG 69245 || || ||||| || || || || ||||| || | || || | | | ||| | Sbjct 18282 TTGTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAAC- 18340 Query 69246 TCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATT 69305 ||| || || ||| | || || ||||| || | ||| || || || || |||| Sbjct 18341 TCCCTCCTCCACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATC 18400 Query 69306 AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 | | | || | || | ||| || | ||||| | ||| || ||||| || Sbjct 18401 GGGAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTT 18460 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 ||||| || || |||| ||||||||||| || || || || ||| ||||| Sbjct 18461 CTGCTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTC 18520 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA-- 69483 |||||| | || | || | ||| | | || || || ||||||| | Sbjct 18521 AATCTGGGCGTCAAGGATCGCGAACCACAGCTGCTGGGCGTTGAT---GGTCTTGCGAGC 18577 Query 69484 -CGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCA 69540 ||| || || || || || | ||| | | | || || || || ||||| || Sbjct 18578 ACGCCCTTCCTTCTCGTACTTCTCGTAGAGGGTC--TCAAACTCTTCACCCCAGCACTCG 18635 Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600 | | ||||||| |||||| ||||| | ||| |||| ||| ||| || | | Sbjct 18636 TAGAGTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTT 18695 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 ||||| || |||||||| | ||| | || || || || || | | | | || Sbjct 18696 TTCATGAAGAGATCGGGCACCCACAATGCGTAGAACAAG-TCACGAGCACGGTGGAGCTC 18754 Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 || || ||| || ||||| || ||||| | | ||| | ||||| || || || Sbjct 18755 GTTACCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAG 18814 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTT 69779 || || || | | ||| || || ||||||||| || | ||| | || || | Sbjct 18815 GTAGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATC 18874 Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 ||| ||||||||| ||| || ||||| ||||| || |||||| || || || || Sbjct 18875 ATTGAAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTA 18934 Query 69840 ACT--TCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAG 69897 || || || || || ||||| ||| | || || ||||| ||| || ||| Sbjct 18935 GCTGTTCGTC--GCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAG 18992 Query 69898 ATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTT 69956 || ||||| | ||||| ||||| || || ||||| || ||||| ||| | Sbjct 18993 ATGCAGGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCC 19052 Query 69957 AAGAAGAA--AACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGA 70014 || | ||| || || |||| ||| | || || || ||||| || | || || Sbjct 19053 AACAGGAAGCAAGAG---GACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGG 19109 Query 70015 GATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATA 70074 | ||||||||||| | || | || | ||| | ||| || || | ||||| | || Sbjct 19110 GTAGCGTGAGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATG 19169 Query 70075 TCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTT 70134 || | || || || || | || || ||||| | ||| || || || ||||| ||| | Sbjct 19170 TCACTCTTGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACT 19229 Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 || ||| | || |||||| | | |||| || || || || || |||| ||| Sbjct 19230 TTGCCATTGACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTAC 19289 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTT 70238 ||||| | |||| ||||| | || || || | ||||| Sbjct 19290 TCGAAGTCCCGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686885032955520