Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq89 84.2 1e-11 >seq89 Length=77706 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| || ||||| |||||| || ||||| || || || || || Sbjct 73654 AGTCGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGA 73713 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 73714 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCC 73773 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || ||| | || | ||| |||||| |||| || Sbjct 73774 TTGTCCTGAATCTTCTG-CTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGT 73832 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTGA 34711 ||||| || || || || || ||||| || ||||||| |||||| Sbjct 73833 GATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATTGTTGA 73877 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| ||||| || ||||| |||||| || ||||| || || Sbjct 73189 CCGCCACGTAGACGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 73248 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| || || || || || || || || | ||||| ||||| || || Sbjct 73249 AACGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGA 73308 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||| || || ||| | || | ||| |||||| Sbjct 73309 ATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTGTCGATAGAGTCCGACGGCTCCAC 73367 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || ||||| || || || || || |||||||| ||||||||| Sbjct 73368 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 73416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718982596944