Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq89 178 3e-39 seq165 163 7e-35 seq692 141 2e-28 seq42 93.3 1e-13 >seq89 Length=77706 Score = 178 bits (196), Expect = 3e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || ||||||||||| ||||| || |||||||| || || || || Sbjct 73423 CGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 73482 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| || || || ||||||||||||| || Sbjct 73483 CGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCC 73542 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || |||||||| ||||| | ||| || || || || || Sbjct 73543 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGC 73602 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| | |||||| ||||| | |||||| Sbjct 73603 GTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73643 Score = 174 bits (192), Expect = 4e-38 Identities = 168/213 (79%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || ||||||||||| ||||| || |||||||| || || | ||| || | || || Sbjct 73204 AGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAA-CGTACGACCGTC 73262 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| |||||||| || || || ||||||||||||| || |||||||| Sbjct 73263 CTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 73322 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| ||||| || |||||||| ||||| | ||| || || || || || |||||||| Sbjct 73323 CTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 73382 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| | |||||| ||||| | |||||| Sbjct 73383 CTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73415 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || ||||||||||| ||||| || |||||||| || || || || Sbjct 73651 CGCAGTCGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 73710 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| | || || ||||||||||||| || Sbjct 73711 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCC 73770 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || |||||||| ||||| | ||| || || || || || Sbjct 73771 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGC 73830 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| ||||| | |||||| || || | ||||||| Sbjct 73831 GTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 73872 >seq165 Length=56023 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | ||||| Sbjct 51936 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 51877 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||||||||| | || ||||||||| Sbjct 51876 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 51817 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || ||||| ||||||| || || || || ||||| || |||||| Sbjct 51816 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTC 51757 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | |||||| || Sbjct 51756 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 51722 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | ||||| Sbjct 52392 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 52333 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||||||||| | || ||||||||| Sbjct 52332 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 52273 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || ||||| ||||||| || || || || || || || |||||| Sbjct 52272 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTC 52213 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 52212 TTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || ||||| || || || || | ||||| Sbjct 52164 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCC 52105 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||||||||| | || ||||||||| Sbjct 52104 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 52045 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || ||||| ||||||| || || || || || || || |||||| Sbjct 52044 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTC 51985 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 51984 TTACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 >seq692 Length=12785 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 10991 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 10932 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || |||||||| || | |||||||||||||||||| || || || || || || Sbjct 10931 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10872 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 10871 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 10812 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 10811 ATCTGCAT 10804 >seq42 Length=107536 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||| || | || || Sbjct 97403 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 97462 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| |||||||| || || || |||||||| || | |||| Sbjct 97463 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 97513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159110890674320