Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq293 196 1e-44 seq89 158 3e-33 seq165 134 3e-26 seq692 120 7e-22 seq623 93.3 1e-13 seq439 86.0 1e-11 >seq293 Length=38087 Score = 196 bits (216), Expect = 1e-44 Identities = 216/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| ||||| || | ||||| | ||| ||| | | Sbjct 25150 AACTTTATATTTAATTTTTAGTGCTTTTGCTGGTGTTGTTGGTACAACATTATCTTTATT 25209 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| || ||| |||||| || | || ||| ||| | || Sbjct 25210 AATTAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCAATTATA 25269 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || | || || ||||| ||| ||||| |||||||||| |||||||| | | | Sbjct 25270 TAATGTTGTTGTAACTGCACATGCTTTTATTATGGTTTTCTTTTTAGTTATGCCTGCTTT 25329 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || |||||||||||||| ||||| |||||||||||||| Sbjct 25330 AATTGGTGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCACCTGATATGGCTTT 25389 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 25390 CCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 25437 Score = 134 bits (148), Expect = 3e-26 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| |||||||||||||| |||||||| || || |||||||||||||||||||| Sbjct 30215 GAAAATTTGTCCATCAGTAATAGAAATAACATTAGTTGGAATATAAGCAGAAACATCACC 30274 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | | |||||| ||||||| ||| |||||||||| ||| |||| Sbjct 30275 AGCTTGTGTTTCAATTATAGGTAAAGCTGTTAATGAACCACCACCAATTTTTCTATT 30331 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 22215 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 22274 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| | Sbjct 22275 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 22333 Query 6865 GTAAT 6869 | ||| Sbjct 22334 GCAAT 22338 Score = 107 bits (118), Expect = 5e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073 || || | |||||| | || || || |||||||||| | |||| |||||||||||||||| Sbjct 30549 CACCATTACAATACTTAGCTCCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATA 30490 Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||||||||||| |||| |||| ||||||||| |||||| Sbjct 30489 ATGGTAAACATGCTGTAATTTTCTATGATGATTTATCAAAACAA 30446 Score = 104 bits (114), Expect = 6e-17 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || ||||||||||| || |||||||||||||| | | |||||| ||||| ||||| Sbjct 25834 TTCTGGGTGACCAAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCCCCTGA 25775 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 25774 AGGATCATAAAAAGAGGTATTTAAATTTCTATCAGTTAATAACA 25731 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 18804 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 18863 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 18864 GTAACATGATGTATAGGGTCTGACAC 18889 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 22902 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 22843 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 22842 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 22783 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 22782 AACGCGTTAGCT 22771 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| || ||| ||||||| | || |||| |||||| Sbjct 25656 AAAGGTAATCTATGAAAACTTAAACCTGGAGCTCGCATATTATAAATAGTAGAAATAAAA 25597 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 25596 TTAATTGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 25537 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || || || || || || |||| |||| ||| || |||||||| || || || Sbjct 25536 ACTGATGGTCCAGAATGTGCTTGTACACTAGA---TAATGGGGGGTAAACGGTCCAACCT 25480 Query 371542 GT 371543 || Sbjct 25479 GT 25478 >seq89 Length=77706 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| ||||| || || || |||| ||||| ||| ||| || Sbjct 73194 ACGTAGACGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGT 73253 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 73254 ACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCC 73313 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 73314 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAG 73373 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||||||| ||||||||||| || Sbjct 73374 CGTGATCGTCTTCCCCGTCAAAGTCTT 73400 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| ||| || ||||| ||||| || || || |||| ||||| ||| || || Sbjct 73651 CGCAGTCGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 73710 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| | ||| || ||||| || ||||| || Sbjct 73711 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCC 73770 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | | Sbjct 73771 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGC 73830 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||||||| ||||||||||| || | ||| | |||||| Sbjct 73831 GTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 73872 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| ||| || ||||| ||||| || || || |||| ||||| ||| || || Sbjct 73423 CGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 73482 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 73483 CGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCC 73542 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | | Sbjct 73543 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGC 73602 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||| ||||||||||| || Sbjct 73603 GTGATCGTCTTCCCCGTCAAAGTCTT 73628 >seq165 Length=56023 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || || ||| | ||||| Sbjct 52392 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 52333 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 52332 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 52273 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| || ||||||| || || | |||||||| | || |||||| Sbjct 52272 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTC 52213 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||| | ||||| Sbjct 52212 TTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || || | ||||| || || ||| | ||||| Sbjct 52164 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCC 52105 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 52104 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 52045 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| || ||||||| || || | |||||||| | || |||||| Sbjct 52044 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTC 51985 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||| | ||||| Sbjct 51984 TTACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || || ||| | ||||| Sbjct 51936 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 51877 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 51876 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 51817 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| || ||||||| || || | |||||||| | || |||||| Sbjct 51816 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTC 51757 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || || | ||| | ||||| || Sbjct 51756 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 51722 >seq692 Length=12785 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || |||||| Sbjct 10961 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCC 10902 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 10901 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTG 10842 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 10841 ATGGTCTTGCCCGTCA 10826 >seq623 Length=15207 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 ||||| || ||||| || |||||||||||||| ||||| ||||||||||||| ||| | Sbjct 12578 GGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCATCTGATATGGCTTTCCCACGT 12519 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | || |||||||||||||| ||| ||| || | ||||| Sbjct 12518 ATGAATAATATAAGTTTTTGGTTATTACATCCAGCTTTATT 12478 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| ||| | | |||||| || | | ||||||| | | |||| |||||| Sbjct 12259 AAAGGTAATCAATGAAAACTTAAACCTGGAGCCCGCATATTATAACTAGTAGAAATAAAA 12318 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || | || |||| | |||||| ||||||| | |||||||||||| || |||||||| Sbjct 12319 TTAAATGCACCTAATAAAGAAGAAATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 12378 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || || || || || | |||| |||| ||| || |||||||| || || ||| Sbjct 12379 ACTGATGGTCCAGAATGTTCTTGTACACTAGA---TAATGGTGGGTAAACAGTCCAACCG 12435 Query 371542 GT 371543 || Sbjct 12436 GT 12437 >seq439 Length=25150 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 |||||| |||||||||| ||||| || |||||| |||| || || |||| ||| Sbjct 18582 CCTTCCTTCTCGTACTTCTCGTAGAGGGTCTCAAACTCTTCACCCCAGCACTCGTAGAGT 18641 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || |||||||| || || || || | |||||| | |||| |||||||| |||||| Sbjct 18642 CCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATG 18701 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAA-AAGT 193772 ||||| || | ||| | |||||||| |||| Sbjct 18702 AAGAGATCGGGCACCCACAATGCGTAGAACAAGT 18735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192488906880992