Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq692 123 6e-23 seq165 113 1e-19 seq89 105 2e-17 >seq692 Length=12785 Score = 123 bits (136), Expect = 6e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 10991 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 10932 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | || |||||||||||| || || ||||| || |||||| | || Sbjct 10931 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10872 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || |||||||| || |||||||| ||| Sbjct 10871 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 10812 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 10811 ATCTGCATGATTCCCT 10796 >seq165 Length=56023 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | ||| | ||||| Sbjct 51936 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 51877 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | ||| || ||||| || Sbjct 51876 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 51817 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| ||||| | || | | || || ||| || || || ||||| || Sbjct 51816 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTC 51757 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| ||||| ||||||| |||||| || Sbjct 51756 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 51722 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | ||| | ||||| Sbjct 52392 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCC 52333 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | ||| || ||||| || Sbjct 52332 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 52273 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| ||||| | || | | || || ||| || ||||| ||||| || Sbjct 52272 TGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTC 52213 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||| ||||||| |||||| Sbjct 52212 TTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 >seq89 Length=77706 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || || |||||||||||||| || ||||||||||| ||| | || | Sbjct 73426 AGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGA 73485 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || || |||||||| |||| ||||||||| | | || || ||| Sbjct 73486 CCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCC 73545 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || || || || | || | ||| || ||| || || || || Sbjct 73546 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTG 73605 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| | ||||||||| |||| |||||| Sbjct 73606 ATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73643 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || |||||||| ||||| || ||||||||||| ||| || || | || || Sbjct 73204 AGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTACGACCGTCC 73263 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||| ||||||||| | | || || ||||| || Sbjct 73264 TCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 73323 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || || | || | ||| || ||| || || || || || || Sbjct 73324 TGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 73383 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||||||| |||| |||||| Sbjct 73384 TTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73415 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || || |||||||| ||||| || ||||||||||| ||| | || | Sbjct 73654 AGTCGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGA 73713 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || ||||||||||| | | ||||||||| | | || || ||| Sbjct 73714 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCC 73773 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || || || || | || | ||| || ||| || || || || Sbjct 73774 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTG 73833 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| | |||||||||||||| ||||||| Sbjct 73834 ATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 73872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153779879745328