Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq165 156 1e-32 seq89 136 1e-26 seq692 122 2e-22 >seq165 Length=56023 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||| |||||||| ||||| || || Sbjct 51728 CAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCGTCGGAT 51787 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| |||||||| ||||||||||||||||| || || |||||||| |||||||| Sbjct 51788 TCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 51847 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | ||||| || || ||| || Sbjct 51848 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAACATC 51907 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 51908 CAGAAGGAGTCGACGCTGCACCTGGT 51933 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || ||||| ||||| || ||||| || || Sbjct 52184 CAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCGGAT 52243 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| |||||||| ||||||||||||||||| || || |||||||| |||||||| Sbjct 52244 TCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 52303 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | ||||| || || ||| || Sbjct 52304 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAACATC 52363 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 52364 CAGAAGGAGTCGACGCTGCACCTGGT 52389 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || ||||| ||||| || ||||| || || Sbjct 51956 CAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCGGAT 52015 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| |||||||| ||||||||||||||||| || || |||||||| |||||||| Sbjct 52016 TCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 52075 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | ||||| || || ||| | Sbjct 52076 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAACATT 52135 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 52136 CAGAAGGAGTCGACGCTGCACCTGGT 52161 >seq89 Length=77706 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || |||||||| || || ||||| || ||| Sbjct 73868 CAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 73809 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || || ||||| |||||||| Sbjct 73808 TCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 73749 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 73748 CGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAACATC 73689 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || || || || || |||| Sbjct 73688 CAGAAGGAGTCGACTCTTCACCTGGTGCTGCGACT 73654 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || |||||||| || || ||||| || ||| Sbjct 73640 CAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 73581 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || || ||||| |||||||| Sbjct 73580 TCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 73521 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || || ||| || ||| || Sbjct 73520 CGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAACATC 73461 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || || || || || |||| Sbjct 73460 CAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACT 73426 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || |||||||| || || ||||| || ||| Sbjct 73412 CAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 73353 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || || ||||| |||||||| Sbjct 73352 TCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 73293 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | || | ||| || ||| || Sbjct 73292 CGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACAACATC 73233 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 73232 CAGAAGGAGTCGACTCTTCACCTGGT 73207 >seq692 Length=12785 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || || ||||| || ||| Sbjct 10807 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCCGAC 10866 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| ||||||||||| || |||||||| Sbjct 10867 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGAATCCCGCCTGACCAGCAG 10926 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 10927 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 10986 Query 178104 CAAAA 178108 || || Sbjct 10987 CAGAA 10991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203688509672992