Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq126 141 1e-28 seq510 140 4e-28 >seq126 Length=136461 Score = 141 bits (156), Expect = 1e-28 Identities = 385/581 (66%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 10882 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10823 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 10822 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 10764 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-----CGCTG-TC 24307 || ||||| || || || || || | || | || || || ||| | || Sbjct 10763 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 10704 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 10703 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 10647 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | | ||||| || || || | || || | || || ||||| | || || Sbjct 10646 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 10587 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | ||||| |||||||| |||||||| || || || || ||||| || | |||||||| Sbjct 10586 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 10527 Query 24488 AATCTGTACTTCTATACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 10526 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 10469 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 ||||| || || || | || || || || || | | |||| || || || || Sbjct 10468 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 10409 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 10408 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 10349 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 24706 || || ||||| | ||| | || || | ||||| || || Sbjct 10348 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 10308 >seq510 Length=41021 Score = 140 bits (154), Expect = 4e-28 Identities = 712/1125 (63%), Gaps = 10/1125 (1%) Strand=Plus/Minus Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 21017 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 20958 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 20957 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 20898 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 | || || | ||| |||| || ||||||||| || | || || | || |||||| Sbjct 20897 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 20838 Query 53630 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT 53689 || | || || |||||||| || | |||| | | || || || | | Sbjct 20837 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 20778 Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 |||||||| || || | ||| |||| || || || || ||||||| | || Sbjct 20777 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 20718 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 || | || | || ||| | || || | ||| || || || || || || || Sbjct 20717 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACC-AAGTTCTGCTGGTTC 20659 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||| |||| || ||||| || || ||||| ||| || || |||||||| | Sbjct 20658 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 20599 Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCT 53928 |||| || || ||| | |||| || ||| | | | | || || || | Sbjct 20598 TCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCT-T 20540 Query 53929 TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988 ||||| | ||||| ||||||||| || ||| || | || || |||||| Sbjct 20539 CTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCAGCAC-TCGTACAGACCAGGAGC 20481 Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 20480 TTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATC 20421 Query 54049 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 ||| | ||| || || ||| | || | || | || ||| || || ||||| Sbjct 20420 AGGCACCCACAGCGCGTAAAACAAGTCGC-GGCGCGGTGCAGCTCATTACCGTGGTTCTT 20362 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 ||||| |||||| | | | || | |||||||| |||||||| || | | Sbjct 20361 ACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGA 20302 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 || || || ||| ||||| || | || | ||| |||| ||| | || | ||| Sbjct 20301 GCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAA 20242 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 || ||| ||||| || || || | || || || ||| ||| ||||| | |||| || Sbjct 20241 CA-TGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCG 20183 Query 54289 AATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 54346 || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 20182 GATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGC 20125 Query 54347 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||| || || || |||||||| ||| |||||| ||| | ||| || || | Sbjct 20124 TTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAA 20065 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 20064 GACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAAC 20005 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || | || | || | ||||||||| | || || | || || | | || || ||| Sbjct 20004 TTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCCT 19945 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | || ||||||| | ||| ||||| || | || || | |||| Sbjct 19944 AACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 19900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593682139778160