Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq126 329 3e-85 seq290 161 1e-34 seq188 134 1e-26 seq135 131 2e-25 seq204 127 2e-24 >seq126 Length=136461 Score = 329 bits (364), Expect = 3e-85 Identities = 440/603 (73%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| |||||| | |||||||| || | | || |||||| |||||| Sbjct 10284 GAGAACCCCAACCGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTAC 10343 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || || |||||||| || |||||||| | |||||| | ||||| || || | | | || Sbjct 10344 AAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGACCTCAAG 10403 Query 116710 CGACTGGGAGC--GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| ||| ||| | ||||||||||| || ||||||||||||||||| ||||| Sbjct 10404 -GACTGG-AGCAAGCTC-ACGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTC 10460 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||||| ||||| ||||| |||||||| ||| | | ||| | || ||| Sbjct 10461 TTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTG 10520 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| ||||||| || |||||||| ||||| ||||||||||| |||||| | |||||| Sbjct 10521 CAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCG 10580 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 || | || || ||||| ||||||||| | || |||||| || | | Sbjct 10581 GAGGTCTACTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAAGGACCATCTC 10640 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| ||||| || || || |||| ||||||| | ||||| || ||| Sbjct 10641 CTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGG 10700 Query 117008 ATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || || || | | || ||| | ||||||||| |||| ||||| || || || || Sbjct 10701 TGCGACCCGC-GTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGG 10759 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | ||||||| |||||| |||| | |||| |||||||| ||||| |||||||||||||| Sbjct 10760 CATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCC 10819 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| |||| ||| |||||||||||| | |||||||| |||| ||||| || Sbjct 10820 CGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGC 10879 Query 117187 CTG 117189 ||| Sbjct 10880 CTG 10882 >seq290 Length=60535 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || |||||||| |||||||| ||||||| || | Sbjct 10465 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 10524 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||||| | | | ||||| | ||||||| ||||| ||||| ||||| | ||| Sbjct 10525 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 10584 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||| Sbjct 10585 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 10644 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| | || ||||| || ||| |||| || | || || ||| Sbjct 10645 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGC 10698 >seq188 Length=115905 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || | || ||||| || ||||| | ||||| || | Sbjct 15609 AAGATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCT 15550 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| |||| || | ||||| || |||||||| | || Sbjct 15549 TCGGACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGA 15491 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 15490 CCAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 15431 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | ||||| || || ||| |||| || | ||||| Sbjct 15430 CAACATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGAGGCGG 15380 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | ||||| || | | Sbjct 14922 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 14863 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || |||||||| | ||||| Sbjct 14862 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 14804 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 14803 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAA 14744 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || || ||| |||| || | ||||| Sbjct 14743 CATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGTGGCGG 14696 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | ||||| || | | Sbjct 15150 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15091 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || |||||||| | ||||| Sbjct 15090 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 15032 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 15031 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAA 14972 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || || ||| |||| || | ||||| Sbjct 14971 CATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGAGGCGG 14924 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | ||||| || | | Sbjct 15378 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15319 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || |||||||| | ||||| Sbjct 15318 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 15260 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 15259 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 15200 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || ||| |||| Sbjct 15199 CATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCG 15164 >seq135 Length=100430 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | || ||||| ||||| ||| ||||||| || | Sbjct 43050 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCG 42991 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | || |||| ||||| || ||||| || | || Sbjct 42990 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGA 42932 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| ||||| || |||| |||||||| | ||| || Sbjct 42931 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTA 42872 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||| | || || || || ||| |||| Sbjct 42871 CAACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCG 42833 >seq204 Length=54989 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| |||||||| ||||||| || | | Sbjct 44213 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 44272 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| ||||| | |||||| Sbjct 44273 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 44332 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 44333 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 44392 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 44393 ATCCAGAAGG 44402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184957243920