Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq290 138 1e-27 seq204 122 1e-22 seq188 122 1e-22 seq135 114 1e-20 >seq290 Length=60535 Score = 138 bits (152), Expect = 1e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| || || ||||| || | |||||| || | Sbjct 10683 ACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 10624 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | ||| | | |||||| Sbjct 10623 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTT 10564 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||||| || |||| | | | || | |||| || ||||| |||| ||||| Sbjct 10563 GTCCTGAATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 10505 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| |||||||| || ||||| || || || |||||||| Sbjct 10504 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 10465 >seq204 Length=54989 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 44402 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44343 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | | |||||||||| |||||| || |||| | | | Sbjct 44342 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 44284 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || ||||| |||| ||||||||| |||||||| | ||||| ||| Sbjct 44283 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 44224 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 44223 AAGATCTGCAT 44213 >seq188 Length=115905 Score = 122 bits (134), Expect = 1e-22 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||| | ||| || | | ||||| ||||| || | ||| |||||| || || |||| Sbjct 14688 CCTAGTTTCCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGT 14747 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | ||| ||| || || |||| || |||||||| |||||||| || | |||||||||| Sbjct 14748 AGTCACTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGT 14807 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127 | | ||| | || ||||||||| ||| ||||| |||| ||| | | | || ||| Sbjct 14808 CAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAA 14866 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || | |||||| || ||||| || | ||||| || ||||| ||||| Sbjct 14867 GGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 14922 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| ||||| || | ||| |||||| || || ||||| ||| | Sbjct 14924 CCGCCTCGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14983 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| |||||||| || | ||||||||||| | ||| Sbjct 14984 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15043 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| ||||| |||| ||| | | | || ||| | ||||| Sbjct 15044 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 15102 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||| || ||||| || | ||||| || ||||| ||||| Sbjct 15103 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15150 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| ||||| || | ||| |||||| || || ||||| || | Sbjct 15152 CCGCCTCGAAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15211 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| |||||||| || | ||||||||||| | ||| Sbjct 15212 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15271 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| ||||| |||| ||| | | | || ||| | ||||| Sbjct 15272 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 15330 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||| || ||||| || | ||||| || ||||| ||||| Sbjct 15331 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15378 Score = 109 bits (120), Expect = 6e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| ||||| || | || |||||| || || ||||| || | Sbjct 15380 CCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15439 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| |||||||| || | ||||||||||| | ||| Sbjct 15440 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15499 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| ||||| |||| ||| | | | || ||| | ||||| Sbjct 15500 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 15558 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||| || ||||| || | ||||| || || || ||||| || || Sbjct 15559 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTTGAC 15612 >seq135 Length=100430 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | || |||||| || || |||||||| ||| || || | Sbjct 42832 ACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC 42891 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || || ||||||||||| | ||| | || ||||| Sbjct 42892 GTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTT 42951 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| || | Sbjct 42952 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGGGTAA 43010 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| ||||| || | |||||| || ||||| ||||| || Sbjct 43011 TGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 43050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571779595572760