Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq856 111 3e-19 seq126 109 1e-18 seq1455 91.5 3e-13 >seq856 Length=18672 Score = 111 bits (122), Expect = 3e-19 Identities = 259/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||||| ||| |||| ||||| || || ||||||||||| || ||| |||| Sbjct 15833 CTACCCCACTTGCTGTTCTACGGACCTCCAGGTACTGGCAAGACGTCCACGATCGTGGCT 15774 Query 254061 CT--GGCCCGAACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 | ||| | ||| || |||| | || || || | ||| | || |||||||| Sbjct 15773 GTGGGGCGCCAACTCT-TTGGCCCGGACTTCCGCAAGAACGGCCGCTTCCTGGAGCTGAA 15715 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || || || || || | | || || ||||| ||| |||||| ||| || || Sbjct 15714 CGCGTCGGATGACCGAGGTATCAAGGTGGTACGCGAGAAGGTCAAGAGCTTCGCCCAG-G 15656 Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 || | | || ||| |||| ||||| || || || | | || || ||||| Sbjct 15655 GTGCCATCAGCAGTGCCA--GCGGCCTACCGCCCTTTAAAATCATCGTACTCGATGAGGC 15598 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 || ||||||||| ||||||||| || || || || || | |||||||| | ||| Sbjct 15597 CGATTCCATGACGGGCGACGCGCAATCTGCGCTGCGTCGCATGATGGAGAATTATTCCAA 15538 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCT 254354 || || || |||||||| | || |||||||| |||| ||||| | || |||| Sbjct 15537 GGTCACTCGCTTTTGCCTCATCTGTAACTACGTGAGTCG--CATCATTGAGCCTGTGGCC 15480 Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377 || || || ||||| || || || Sbjct 15479 TCGCGTTGTGCCAAATTCCGCTT 15457 >seq126 Length=136461 Score = 109 bits (120), Expect = 1e-18 Identities = 108/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 157197 AAAAGTCCGCATCCAAAC--AAAACTGCTGCTTCTCACGTTCGAGCAAAACCCCGGGCTT 157254 ||||||||||||||| | ||||| ||||| |||| ||| ||| |||| ||| Sbjct 11229 AAAAGTCCGCATCCAGAGTGAAAAC--CTGCTCCTCAGCGGCGACACCAACGCCGGCCTT 11172 Query 157255 GCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTC 157314 | ||||||| |||| | ||||| |||||||||||||| || |||||||| |||||||| Sbjct 11171 GGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTC 11112 Query 157315 CATCCACTCGAATGGGTT 157332 |||||| || || ||||| Sbjct 11111 CATCCAGTCAAAAGGGTT 11094 >seq1455 Length=23779 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115414 CTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTG 115473 |||||||| || || ||||| |||||||||||||||||| | | ||| |||||||| Sbjct 19022 CTCTGAATGGGCTCAATGATCTTGGTGGAGTTGTTGCAGGCCAATGCGAATCGCGTCGTT 19081 Query 115474 CTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCT 115533 |||| | | ||||| | ||||| || ||||| || ||| |||||| ||||| Sbjct 19082 GCCGAGAAGATCTCCATAGTACGTCGTAGAGCCTGCTGGGCTGCAGCTGTCATTGAGTCG 19141 Query 115534 GCCTCGTCGAGAACGACAATCTT 115556 |||||||| | | ||| ||||| Sbjct 19142 GCCTCGTCCAATATGACGATCTT 19164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073693250670656