Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq510 257 1e-63 seq135 154 1e-32 seq188 143 2e-29 seq290 138 1e-27 seq204 113 4e-20 >seq510 Length=41021 Score = 257 bits (284), Expect = 1e-63 Identities = 1211/1896 (64%), Gaps = 49/1896 (3%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| || |||| || ||| ||| | || |||||||| Sbjct 21675 CTTGTCCACAGTGAACTGGATAGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCC 21616 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| |||||||| || || ||||||| || | | |||| Sbjct 21615 GGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGTCGG 21556 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || |||||||||||||| |||| | || || || || || | Sbjct 21555 GTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCCACGGTCAGCCGA 21496 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | | | | | || ||||| || ||||||||| | | | | || Sbjct 21495 CAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAACATC 21436 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT-TAA 22403 ||| || | || | |||| || || || || | | ||| ||| || Sbjct 21435 ATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAGAATCTGATTACGTAC 21376 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CT 22462 | ||| ||| | |||| || | | || || | ||||| ||| || | | Sbjct 21375 TTCCGGCGT-CCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAACGATCG 21317 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 |||| ||| || | ||| || || || | ||| |||||||| ||| | || |||| ||| Sbjct 21316 TGAA-CTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGATAGAC 21258 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| |||||||| || || || |||||||| || || | ||| |||||| Sbjct 21257 TCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCAGCGAG 21198 Query 22583 TTTCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACCAGTCCCA-----CAG 22635 || | | ||||| || ||| | | | | | || | ||||| ||| ||| Sbjct 21197 TTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGC--CCAGTTCCAAAGCCCAG 21140 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 || || || || || | ||||||| ||| | || || | || ||| ||||| Sbjct 21139 AT--GAAGGTGTGAC---GCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 21085 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754 ||| | | |||| ||||| ||||| || || ||||| || || | || ||||| | Sbjct 21084 GCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC-CATCGACGTCTCCATGG 21026 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCG 22813 | | | || || ||||||||||| |||||||||||||| || ||| ||| ||| Sbjct 21025 CAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGG-GCTCTCG 20967 Query 22814 TACGGCATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 ||| | || ||| | | |||||| ||||||| |||||| ||||| ||||| || || Sbjct 20966 AACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGG 20908 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 || | || || ||| ||||| | | |||||| | || ||||| Sbjct 20907 ACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGAC 20848 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 |||| | ||| | || | | || | | ||||| | || Sbjct 20847 CTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACAC 20788 Query 22993 GCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTC 23052 || || | |||||| | | || | || || | ||||| || |||||||| Sbjct 20787 ACCGTTTT---CCACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTC 20731 Query 23053 GTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAA 23112 || ||||||||||| | | |||| |||| ||||| | ||||| || || Sbjct 20730 ATCGGGTGACGTGTACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACC-AA 20672 Query 23113 ATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGT 23172 || |||||| || || || | ||||||||||||||| | ||| ||||| Sbjct 20671 GTTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGT 20612 Query 23173 CTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTA 23232 ||| | ||| | || | ||| || ||||| |||||||| | ||| ||| Sbjct 20611 CTCAATCTGAGCGTCTAGGATAGCGAACCACAGCTGCTGAGCGTTGATT-GTCTTACGCG 20553 Query 23233 CCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 | | ||||| | ||||||||||| |||| || ||||| || | || | || ||| Sbjct 20552 CACGTCCTTCCTTCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCC-AGCACTCGT 20494 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGC 23348 ||| || || | || | ||||| | | ||||||| | | |||| || || | Sbjct 20493 ACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTT---GCCATTGGCCTCCACTC 20437 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 |||| || ||||| || | ||| || ||||| |||| |||||| |||| | || Sbjct 20436 TCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCGCGG-CGCGGTGCAGCT 20378 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | || ||| |||||| || ||||| || || |||||||| || ||||||||||| | Sbjct 20377 CATTACCGTGGTTCTTACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCA 20318 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 ||| | || |||| |||| | |||| |||||||| || || || || ||||||| Sbjct 20317 AGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGT 20258 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 ||| |||| | | ||| || | | ||||| || | |||| | || ||| | Sbjct 20257 CGTTAAACACACGCAACAT-GGGATAATGCCGTTAGAGGAGCCG--TTCG--TGCCGCGG 20203 Query 23589 TCGAACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | | || || || || | |||||| | || ||| || || || || |||| Sbjct 20202 ATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTA 20143 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || || |||||||| || || |||||||| |||||||| || ||| || | | Sbjct 20142 GAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATA 20083 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 || | | ||| || ||||||| || | ||||| |||| ||| || || ||| Sbjct 20082 GCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGG 20023 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||||||||| ||| | | |||||| || | |||||| || | |||| | ||| Sbjct 20022 GTGGCGTGCGTGAAGAACTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATG 19963 Query 23825 TC-CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || |||| ||| || || | || || |||| ||||| | || || | ||| ||| Sbjct 19962 TCGCTCT-TGTGGATGCCTAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCAC 19904 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||| || | ||| || || || | | ||| || || || || ||||| || Sbjct 19903 CTTGCCATTCACGCGGAAGAGGTAGCCGCGCTCGAGCGTCTTGAAGCCGAAGTAGTCGTA 19844 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||||| || ||||| | |||||||| ||||| Sbjct 19843 CTCGAAGTCGCGGTCGTGGATGATGGCCGAGTTCAA 19808 >seq135 Length=100430 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| |||| ||||| || || ||| ||||||| || ||| Sbjct 43050 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGACGTGGAGCCG 42991 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| || ||||||||||||| | ||||| ||| Sbjct 42990 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGCATTCCGCCTGAC 42931 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||||||||| ||| | || ||| | || |||||||||| Sbjct 42930 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGAGCGATTAC 42871 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || |||||||| ||||| || Sbjct 42870 AACATCCAGAAGGAGTCTACTCTTCACCTGGTGCT 42836 >seq188 Length=115905 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||| ||||| |||||||| | ||||| || || Sbjct 15609 AAGATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCT 15550 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | ||||| || | || ||||||||||||| | ||||| ||| Sbjct 15549 TCGGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGAC 15490 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||||||||| ||| |||| ||| || ||||||| || Sbjct 15489 CAGCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 15430 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || || || ||||| || | ||| | ||||||| Sbjct 15429 AACATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGTCTGCGAGGCGGTA 15378 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| |||||||| | ||||| || || || Sbjct 15150 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15091 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || | || ||||||||||||| | ||||| |||||| Sbjct 15090 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 15031 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||||||||| ||| |||| ||| || |||| || || ||| Sbjct 15030 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 14971 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || ||||| || | ||| | ||||||| Sbjct 14970 ATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGAGGCGGTA 14922 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| |||||||| | ||||| || || || Sbjct 15378 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 15319 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || | || ||||||||||||| | ||||| |||||| Sbjct 15318 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 15259 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||||||||| ||| |||| ||| || ||||||| || ||| Sbjct 15258 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 15199 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || ||||| || | || | ||||||| Sbjct 15198 ATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTTCGAGGCGGTA 15150 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| |||||||| | ||||| || || || Sbjct 14922 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACGATCACGCTGGACGTGGAGCCTTCG 14863 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || | || ||||||||||||| | ||||| |||||| Sbjct 14862 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 14803 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||||||||| ||| |||| ||| || |||| || || ||| Sbjct 14802 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGTGACTACAAC 14743 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || || ||||| || | ||| | ||||| Sbjct 14742 ATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGTGGCGG 14696 >seq290 Length=60535 Score = 138 bits (152), Expect = 1e-27 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| || ||||| ||||||| || ||| Sbjct 10465 AAAATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCG 10524 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||||| | || | ||||| |||| ||| ||||||||| || | ||||| ||| Sbjct 10525 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAGGGAATCCCGCCTGAC 10584 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| ||| || || || Sbjct 10585 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTGTCGGACTAC 10644 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| || || ||||| || | ||| | || ||| ||||| Sbjct 10645 AACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGCAAGAAG 10704 Query 31426 CG 31427 || Sbjct 10705 CG 10706 >seq204 Length=54989 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| |||| ||||| || ||||| ||||||| || || Sbjct 44209 AATCATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 44268 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| ||||| | || | ||||| |||| ||| ||||||||| || | ||||| || Sbjct 44269 GTCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGA 44328 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||| ||||| ||| | || ||| Sbjct 44329 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 44368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445736773250640