Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq111 140 3e-28 >seq111 Length=87890 Score = 140 bits (154), Expect = 3e-28 Identities = 307/457 (67%), Gaps = 21/457 (5%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| |||||||| || || | ||||| | | ||||| || || ||||| ||| Sbjct 66446 CGGGAACGGACGTGGTGTGCGTGTAAGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTA 66387 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| ||||| | | ||| | || || || || | || ||||| || || || Sbjct 66386 CACGTGTGCGTCGCGATAAC-GTGGATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGC 66328 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | ||| ||||| || ||||||||||| ||||| || || || || || |||||||| Sbjct 66327 AACCAGTCGTGTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTC 66268 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| ||| || || | ||||| || ||||| ||||| || || Sbjct 66267 GGCCGATCGCTGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAA 66208 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| ||||| || || |||||| ||| || || ||||||||||| ||| || Sbjct 66207 CATGTGGCAAGGCGGCAGGGCCATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCAC 66148 Query 21188 GATGCGCCGATC-GTGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGC-A 21237 || || || || || || || || ||| ||| |||| | || | Sbjct 66147 AATCCGTCGGTCAGTAGGATTCGTACGCAGCTTGTGAAT------CACCTC----TGCTA 66098 Query 21238 GCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAAT 21297 |||||||||| || || || ||||| || | || |||||| || ||||| | Sbjct 66097 GCTGGTCCACACCTTGGCCAGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGT 66038 Query 21298 GTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | | ||||||||| ||||| ||||| || || || || Sbjct 66037 GACGCCACTGGAAGCCGTAAACCGGTCCAAGGTCTCC 66001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427748279714160