Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq126 183 4e-41 seq510 158 2e-33 >seq126 Length=136461 Score = 183 bits (202), Expect = 4e-41 Identities = 394/581 (68%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 10882 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10823 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 10822 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 10764 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-----CGCTG-TC 50132 ||| ||||| || || || || || | || | ||| || || ||| | || Sbjct 10763 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 10704 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | | |||||| | ||||| | |||||||| | |||||||| || || || ||||| Sbjct 10703 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 10647 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | | ||||| || || || | || || | || || || || | || || Sbjct 10646 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 10587 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 10586 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 10527 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||||||| | | || ||||| || || || || ||||| || ||||||||| Sbjct 10526 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 10469 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||| || || || | || || || || || ||| |||||| || || || || Sbjct 10468 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 10409 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 10408 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 10349 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 || || ||||| | ||| | || || | || || ||||| Sbjct 10348 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 10308 >seq510 Length=41021 Score = 158 bits (174), Expect = 2e-33 Identities = 718/1126 (64%), Gaps = 12/1126 (1%) Strand=Plus/Minus Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || || || ||||| || ||||| || | || | |||| |||| || || | || Sbjct 21017 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 20958 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 20957 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 20898 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 20897 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 20838 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT 79599 || | || || |||||||| || | ||| | | || || || | | Sbjct 20837 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 20778 Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 |||||||| || ||| ||||| |||| || || || || ||||||| | || Sbjct 20777 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 20718 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 || | || | ||| ||| | ||| || | || || || || || || || || Sbjct 20717 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACC-AAGTTCTGCTGGTTC 20659 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 20658 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 20599 Query 79780 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ACTTGTATCTCTTTTCTC 79837 |||| || || ||| | | || |||| || ||| | || | | || || || Sbjct 20598 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 20541 Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 | ||||| | | ||| | ||| ||||| || ||| || |||| | |||||| Sbjct 20540 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCAGCAC-TCGTACAGACCAGGAG 20482 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 ||||| ||||| | ||| ||||| |||| ||| |||| ||||| ||||||| Sbjct 20481 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 20422 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||| | ||| || || ||| | || | || | ||| ||| || || |||| Sbjct 20421 CAGGCACCCACAGCGCGTAAAACAAGTCGC-GGCGCGGTGCAGCTCATTACCGTGGTTCT 20363 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 20362 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 20303 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 ||| || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 20302 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 20243 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| ||| ||||| || || || | || || || ||| ||| ||||| | |||| | Sbjct 20242 ACA-TGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 20184 Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 20183 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 20126 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||| || || || |||||||| || ||||| ||| | ||| || || Sbjct 20125 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 20066 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 20065 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 20006 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 || | |||| || | ||||||||| | || || | || || | | || || || Sbjct 20005 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 19946 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 || ||| ||||||| | ||| ||||| || | || || | |||| Sbjct 19945 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 19900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718221062059880