Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq126 190 3e-43 seq510 107 3e-18 seq594 104 3e-17 seq111 91.5 2e-13 >seq126 Length=136461 Score = 190 bits (210), Expect = 3e-43 Identities = 601/894 (67%), Gaps = 48/894 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||||| ||||| |||| | || || | ||| | |||||||| || || |||||||||| Sbjct 10305 CTGTTCCCCATTCAGGAA-CACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTT 10363 Query 125054 TTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 ||||||| || ||| |||| || || || | |||| | || ||| | | | | Sbjct 10364 CTGGACGGCTGAGGAGCTCGACCTTGTGCACG-ACCTCAAGGACTGGAGCAAGC---TCA 10419 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || | |||||| | || || |||| | | |||||||| || | | || || | Sbjct 10420 CGGACAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTA 10479 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTC 125230 |||| ||||| || || | || || || ||| || || | || |||| || Sbjct 10480 TCGTGAACGAGAACTTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGC-TC 10536 Query 125231 GT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 || |||| || || ||||| ||| ||||||||| | |||||||| | ||||| | Sbjct 10537 GTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGC 10596 Query 125290 TGATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAAT 125344 | ||||||| |||||| ||||||| || | || ||| ||| | || || Sbjct 10597 TCATTGACACGTACATCAAGGACGCGATCGAGAAGG---AC-CAT-CTCCTGCGTGCCAT 10651 Query 125345 CGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-C 125402 || || | || | | | ||| || |||||||| |||| | |||| ||| | Sbjct 10652 TGAGACCATCCCTTGTGTCACG-AAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGC 10710 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | | || || ||| | || | ||| |||| ||||| || || || ||||||||||| Sbjct 10711 GTGTA-TCCTCCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCATCTTCTTC 10769 Query 125463 TCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 10770 TCGGGCTCTTTCTGCT-CCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGGTCTGAG 10828 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | |||||| | || ||| ||||||||| | ||| ||||| ||| || | Sbjct 10829 CTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTT 10888 Query 125582 GTTTCGCAACTATCTGCGTC-CCGAG-TGC-AGATCCAGCGATGAAAAGGTCATCAACAT 125638 || ||| ||| ||| || || ||| ||| ||| || | | | |||| | Sbjct 10889 GTACTCCAAG---CTG-GTCACCAAGCTGCCAGAG--AGCCGTGTACACGAGATCAT--T 10940 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCA 125697 || || || ||| ||| || || |||||| | || || || || || ||| Sbjct 10941 CGTGAC----GCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGC- 10995 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 ||||||| ||||||| || |||||| ||||||| ||||| ||||| || ||||| | Sbjct 10996 TGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGC 11055 Query 125758 TGTACGAG-TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 | ||| | ||| | | | |||||| ||| |||| ||||| || ||||| | ||| | Sbjct 11056 TCTACTCGCTTGGTGTGTC-CAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 11114 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || | || ||||||||||||||||||||| || |||||||| Sbjct 11115 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 11168 >seq510 Length=41021 Score = 107 bits (118), Expect = 3e-18 Identities = 316/475 (67%), Gaps = 9/475 (2%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||||||||| || |||||||| ||||| || || || | || |||| || ||| | Sbjct 20312 TCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACG 20371 Query 96970 GCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTC 97028 | ||| | |||| | ||| | ||||||||||| || || |||||||| ||| | ||| Sbjct 20372 GTAATGA-GCTGCACCGCGCC-GCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTC 20429 Query 97029 ATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGT 97088 |||||| | || | | | |||| | ||||| | | || ||| || | || ||| Sbjct 20430 ATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGT 20489 Query 97089 CTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC 97148 |||| ||| |||| |||||| |||||||| || ||| |||||| | || || Sbjct 20490 CTGTACGAGTGCT-GGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGA 20548 Query 97149 CG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGGCTCAGG 97206 || ||| |||| | || | || | | |||||| || ||| | ||| |||||| Sbjct 20549 CGTGCGCGTAAGAC-AATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGAC-GCTCAGA 20606 Query 97207 TAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAAC 97266 | ||||| ||| || | ||| ||||||||||| | | || ||||| ||||| | Sbjct 20607 TTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGC 20666 Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326 |||| || || ||| | ||| | ||| ||| | | |||||| | || | Sbjct 20667 AGAACTT-GGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCAC 20725 Query 97327 CGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | || ||| |||||| ||| |||| || || ||||| | |||||| || Sbjct 20726 CCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGA 20780 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 98015 CATCCCGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC 98073 ||| ||||| || ||| | |||| |||||||| || |||||||| | | || | || Sbjct 21426 CATTCCGGATGATGTTAAGGAGAAG-TACAAGACGGTGTGGGAGAT--CAAGCAGAAGGC 21482 Query 98074 TGATC--GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCT 98131 || || || || | || ||| | || | || || ||||||||| ||||| || | Sbjct 21483 TGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGAACAT 21542 Query 98132 GTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAA 98191 || | ||||| || || |||| |||| || || ||||||||||| ||||| || Sbjct 21543 CCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGAAGAA 21602 Query 98192 GGGCCTCAAGACGGGCATGTACTA 98215 ||| |||||||| ||||||||||| Sbjct 21603 GGGACTCAAGACCGGCATGTACTA 21626 >seq594 Length=37886 Score = 104 bits (114), Expect = 3e-17 Identities = 217/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||| ||||||||| |||||| || || |||||||| | ||||||| Sbjct 10078 GAAACCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 10137 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| |||||| ||||| || || || Sbjct 10138 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCAGAGTAGGGCTGCACGTT 10197 Query 127563 CACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAG 127619 || ||||| |||| ||| || | | | || | || |||||||| || Sbjct 10198 GACGCCCCACTTCTCGG---CGTCCAGACCGTAGGCCGTCAGGGCGCGCTGCTGGCACAG 10254 Query 127620 CAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCC 127677 | ||||| ||||| | ||||||||| || ||||| ||| ||| ||| |||| Sbjct 10255 GATCTCGATCTTGTCGATGACCTCGTTACCGCCGTAGTAACGCGCGTTC--GGCAGACCC 10312 Query 127678 TCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAG 127737 || | ||||||||| |||| ||||| | || ||| || || | | | ||| ||| Sbjct 10313 TCGGCATACTTGTTGGTGAGGCACGAGCCCAGGCAGTCCATGACGGCACGCGAGGTGAAG 10372 Query 127738 TTTTCCGATGCGATCAACTC 127757 || ||||| ||||| | ||| Sbjct 10373 TTCTCCGAAGCGATGAGCTC 10392 >seq111 Length=87890 Score = 91.5 bits (100), Expect = 2e-13 Identities = 261/392 (67%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || || ||||| ||||||||| | |||| || ||||||| ||| Sbjct 66001 GGAGACCTTGGACCGGTTTACGGCTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGAC 66060 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | ||||||| | || || ||||| || || | ||||| | ||| ||| | Sbjct 66061 ATGCATG-CAGACTACACTGGCCAAGGTGTGGACCAGCTAGCAGAGG-TGATTCACAAGC 66118 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | |||| || ||| | ||||| || || ||| | Sbjct 66119 TGCGTACGAATCCTACTGACCGACGGATTGTGCTGTCGGCGTGGAACCCGGCCGATCTCA 66178 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 || | ||||| || || || || ||| |||| || ||||| ||| | | || || Sbjct 66179 ACGAGATGGCCCTGCCGCCTTGCCACATGTTCTGC-CAGTTCTACGTTGCCAACGGGGAA 66237 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 || || || ||||| ||| | ||||||||||| || || || || || |||||| Sbjct 66238 TTATCGTGTCAGATGTACCAGCGATCGGCCGACATGGGTCTTGGAGTGCCTTTCAACATT 66297 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || |||| | || |||| || | || || || ||| | |||| Sbjct 66298 GCCAGCTACGCGCTGCTGACACGACTGGTTGCACAAGTGACGGGACTAAAACCTGGCGAG 66357 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTA 70455 ||| | ||| | | ||||||| |||||||| Sbjct 66358 TTCATCCACGTTA-TCGCGACGCACACGTGTA 66388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741009947352920