Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq105 120 3e-22 >seq105 Length=53621 Score = 120 bits (132), Expect = 3e-22 Identities = 236/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 |||||||||| || || ||||| ||||| | | || || || | | ||||||| Sbjct 29037 CACGCCCGTGCTACCAAAGCCGCCGGCGCCACGAGCAGTCTCCTCGATCTCCTCCACCTC 28978 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || ||| || | ||| ||| ||||| || | ||||| || ||| Sbjct 28977 CTGGACCTCCGGGTACTCGATCTTTTCGAGGATGAGCTGAGCCACACGGTCCCCGCGCTT 28918 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||||| | || |||| ||||||||| | |||||||||||||||||||| Sbjct 28917 GACTGGGAAATCCTCGTT--CGAATGGTTGAACAGAATTACGCCCACGTTGCCGCGGTAA 28860 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || ||||| || || || |||||| ||||||||| | ||| || || || ||||| Sbjct 28859 TCAGCGTCAATGACACCAGCGCCCGTGTCGATGAACTTCTTCCATGCGAGACCTGAGCGA 28800 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACT 5797 || |||||||| | ||||| || ||||||| || |||||||| |||| Sbjct 28799 GGTGCCACGCGTGCATAGCAGCCGTCGGGAACGGCGATGATAAGGTCCGTCTTGACCAGA 28740 Query 5798 CGCCGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAGGTC 5844 | | |||||| || ||||||| | |||| | ||| ||||||| Sbjct 28739 CCCTTACCGCCTGCTGGGACGACGGCGTCGTAGGCGGCCGAGAGGTC 28693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430026532071704