Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq111 120 2e-22 >seq111 Length=87890 Score = 120 bits (132), Expect = 2e-22 Identities = 328/493 (67%), Gaps = 16/493 (3%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| || ||||| || || | |||||| ||||| ||||| | | | |||| Sbjct 66421 AGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTACACGTGTGCGTCGCG-ATAACGTGG 66363 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTG--AGGAGAAAGT 25530 | ||||| || |||| ||| || || || | || | || || |||| || || || Sbjct 66362 ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTGCAACCA-GT-CGTGTCAGCAGCGCGT 66305 Query 25531 AGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGA 25590 ||||||| ||||| || || || || | |||||||| || || | |||||| | |||| Sbjct 66304 AGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGTCGGCC-GATCGCTGGTACATCTGA 66246 Query 25591 CACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCT 25650 ||||| | || ||| | ||||| ||||| || | ||| ||| || || || || Sbjct 66245 CACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGAACATGTGGCAAGGCGGCAGGGCC 66186 Query 25651 ATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT- 25709 || | | || |||||||| || ||| | || | | ||| || || Sbjct 66185 ATCTCGTTGAGATCGGCCGGGTTCCACGCCGACAGCACAATCCGTCGGTCAGTAGGATTC 66126 Query 25710 GTCC----CTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGT 25765 || | || | | ||| | || | ||||| ||||| || || | ||||| Sbjct 66125 GTACGCAGCTTGTGA-ATCACCTCTGCT----AGCTGGTCCACACCTTGGCCAGTGTAGT 66071 Query 25766 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTC 25825 |||| |||||||||||||| || || || | | ||||||||| ||||| ||||||| Sbjct 66070 CTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACGCCACTGGAAGCCGTAAACCGGTC 66011 Query 25826 CTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCAT 25885 | ||||||||| | |||| | || | || | |||||| | | || | || |||| Sbjct 66010 CAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCTATCCAGATACTCGCGCGATCCAT 65951 Query 25886 TGGCGTCCCAGAT 25898 || ||||||| || Sbjct 65950 TGCCGTCCCAAAT 65938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340115558764641