Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq290 98.7 8e-16 seq188 86.0 5e-12 seq135 86.0 5e-12 >seq290 Length=60535 Score = 98.7 bits (108), Expect = 8e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || | || || ||||||| |||||||| ||| || Sbjct 10659 CTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCGGCGA 10601 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| || ||| | | ||||||||| |||||||||||||| | Sbjct 10600 AGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGAATTTTCTGCTTGACAT 10541 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||| | || | | |||| |||| || ||||| || || || || || || | Sbjct 10540 TGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGA 10481 Query 48714 CAAAAATCTGCAT 48726 | ||||||||||| Sbjct 10480 CGAAAATCTGCAT 10468 >seq188 Length=115905 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || | || || |||||||||||||||| || || Sbjct 15415 CTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGA 15473 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || ||||||||||| || ||| | | |||||||||| || || ||||||| | Sbjct 15474 AGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGT 15533 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || | || | || |||| || | || || || || ||||| | || || Sbjct 15534 TGTCG--ATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTT 15591 Query 48712 CACAAAAATCTGCATCGTGTCT 48733 ||| |||||||||||| || || Sbjct 15592 CACGAAAATCTGCATCTTGACT 15613 >seq135 Length=100430 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || ||||||||||| || | || || ||||||| ||||| Sbjct 42845 TGAAGAGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCGACCGTCCTCGAGCTG 42903 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| || ||| | | |||||||||| ||| || Sbjct 42904 CTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTT 42963 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 |||||| | | | || || | || | | |||| |||| || ||||| || ||| Sbjct 42964 CTGCTTCACGTTGTCG--ATCGAGTCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCG 43021 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || ||||| || ||||||||| Sbjct 43022 GTCAACGTCTTCACGAAGATCTGCATC 43048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421223902527317