Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq253 161 2e-35 seq35 145 1e-30 seq37 80.6 4e-11 >seq253 Length=136666 Score = 161 bits (178), Expect = 2e-35 Identities = 181/241 (75%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 38514 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 38573 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || ||||||||| ||||||| | |||| || |||| Sbjct 38574 CCGTCGTCTCGCACGTCGTGG-GGTGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 38632 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || || Sbjct 38633 CCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 38692 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 38693 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTTAAGCGTCAGGG 38752 Query 16672 C 16672 | Sbjct 38753 C 38753 >seq35 Length=151205 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| |||||| || |||||||| || || |||||||| || ||| Sbjct 105883 GCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATTACCAAGCCCGCCATC 105942 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || | ||||||| |||| Sbjct 105943 CGTCGTCTCGCACGTCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTATGAGGAGACC 106002 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 106003 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACTCTGTCACCTACACTGAG 106062 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || || || ||||||| | || || || | || ||||| ||| Sbjct 106063 CACGCCCGCCGTAAAACCGTGACGGCCATGGACGTTGTGTACGCTCTCAAGCGTCAGGGC 106122 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 106123 CGCACCCTTTACGGCTTCGG 106142 >seq37 Length=99461 Score = 80.6 bits (88), Expect = 4e-11 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 16438 GCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 |||||||||| |||| ||||||||| ||||| ||||| ||||| |||||||| || || | Sbjct 25301 GCGTCATCGCAAGAT-TCTTCGAGACAACATACAAGGCATCACTAAGCCAGCGATTCGAC 25359 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 | || |||||||| | ||| || || |||| | |||||| | | |||| || | Sbjct 25360 GCCTTGCTCGTCGGGCTGGTGTGGTTCGCATCTCCGTCTTGGTCCACCACGAGACGCGCG 25419 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 || ||| || || | || | || || || || || |||| | ||||||| Sbjct 25420 CAGTGCTGAGGACATTTTTGTCGAGTGCCATTCAAGACGCGATCACCTATTCGGAGCACG 25479 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | || ||||| |||| ||||| || | || || | ||||| ||||| || Sbjct 25480 GACACCGCAAGACGATCACAGGAATGGACGTCATTTACGCGCTCAAACGCCAAGGTCG 25537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070338629681