Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq126 167 3e-36 seq510 143 3e-29 >seq126 Length=136461 Score = 167 bits (184), Expect = 3e-36 Identities = 311/451 (69%), Gaps = 13/451 (3%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||||| |||||||| | ||| || || ||||| || || | || Sbjct 10882 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10823 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || |||||| Sbjct 10822 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAG 10763 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TCA 33477 || ||||| || ||||| || || | || | ||| || || ||| | || Sbjct 10762 ATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC- 10704 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | | |||||| | ||||| | |||||||| | |||||||| || || || |||||| Sbjct 10703 -GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCA 10646 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | ||||| || || || | || || | || || || || | || || Sbjct 10645 CGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTAG 10586 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 | ||||| |||||||| |||||||| ||||| || || ||||| || | |||||||| Sbjct 10585 ACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGGC 10526 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| ||||| | | || |||| ||||| || || ||||| || |||||||||| Sbjct 10525 ACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTGG 10468 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAA 33746 |||| || || || | || || || || || Sbjct 10467 CTGCGAAGAAGGCGAGCACGTGCTTGATGAA 10437 >seq510 Length=41021 Score = 143 bits (158), Expect = 3e-29 Identities = 715/1126 (63%), Gaps = 12/1126 (1%) Strand=Plus/Minus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 21017 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 20958 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 || | ||| || ||||| ||||| | || || || |||||||| || || | ||| | | Sbjct 20957 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 20898 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 20897 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 20838 Query 62817 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62876 || | || || |||||||| || | |||| | | || || || | | Sbjct 20837 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 20778 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 20777 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 20718 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 || | || | || ||| | || || | ||| || || || || || || || Sbjct 20717 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACC-AAGTTCTGCTGGTTC 20659 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 20658 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 20599 Query 63057 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTC 63114 |||| || || ||| | | || |||| || ||| | | | | ||||| || Sbjct 20598 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 20541 Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 | ||||| | ||||| ||| ||||| || ||| || | || || |||||| Sbjct 20540 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCAGCAC-TCGTACAGACCAGGAG 20482 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 20481 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 20422 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 20421 CAGGCACCCACAGCGCGTAAAACAAGTCGC-GGCGCGGTGCAGCTCATTACCGTGGTTCT 20363 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 20362 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 20303 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 20302 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 20243 Query 63415 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCAC 63474 ||| ||| ||||| ||||| || || || || ||| ||| ||||| | |||| | Sbjct 20242 ACA-TGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 20184 Query 63475 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 20183 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 20126 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 |||| ||||| || || ||||| || ||||| ||| | ||| || || Sbjct 20125 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 20066 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||||| || |||| || || || || || | ||||| | |||||||| || | Sbjct 20065 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 20006 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 20005 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 19946 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 || || ||||||| | ||| ||||| || | || || | |||| Sbjct 19945 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 19900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622905797371720