Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq510 304 3e-77 >seq510 Length=41021 Score = 304 bits (336), Expect = 3e-77 Identities = 1063/1639 (65%), Gaps = 59/1639 (4%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | ||| ||| |||||||| Sbjct 20009 TTCACGCACGCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCT 20068 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | ||| |||| || || || ||||| || | ||||| || ||| | Sbjct 20069 TGCTTCCTATTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAA 20128 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || ||| || || || ||||| || ||| | || ||||| | || || Sbjct 20129 TGCGCCTGTATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCC 20188 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | ||| || || | | |||||| | ||| Sbjct 20189 ACTAACAGCTACATCCGCGGCACGAACGGCTCCTCTAACGGCATTAT-CCCATGTTGCGT 20247 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || | || || |||||||| ||||| |||||||| || |||| Sbjct 20248 GTGTTTAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTC 20307 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | ||||| || ||||| | || ||||| || || || || || ||| Sbjct 20308 GCTATCTACTTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAAC 20367 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||| || || || ||||| |||| | Sbjct 20368 CACGGTAATGAGCTGCACCGCGC-CGCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTC 20426 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | |||||||| | || ||| | || || || ||||| ||| Sbjct 20427 TTCATGAAGAGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCT 20486 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| || ||| || || | || ||||| || |||||||| || ||| Sbjct 20487 GGTCTGTACGA-GTGCTGGGCGATGAGTTTGAAGCTCTGTATGAAAAGTACGAGAAGGAA 20545 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || ||||||||||| ||| ||| |||| ||||| || ||| | || | ||| Sbjct 20546 GGACGTGCGCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAG 20605 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| ||| |||| ||| | ||||| || | ||||||||||| |||||| Sbjct 20606 ATTGAGACGGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAG 20665 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| | |||||||| || | |||||| |||| ||| | || || ||||| | Sbjct 20666 CAG-AACTTGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCA 20724 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| ||| || || || ||| | ||||| | ||||| || |||||| || | Sbjct 20725 CCCGATGAGGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTGGAAAAC 20784 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGT----AACCT-ATCATGCTACTTGCAATC 364381 ||| || ||| || || || ||||| || || | |||| || |||| | Sbjct 20785 GGTGTGTTCGACTACAAGAGACTGTATGAGGTGGTCAAGGTGATCACGC-----GCAACC 20839 Query 364382 TCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATG 364440 || ||||||| |||||| || |||||||| || | || || || | || || ||| Sbjct 20840 TCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAG-TCCAACATG 20898 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 || ||||| || |||||| |||| || ||||| || || || | || || | | || Sbjct 20899 CGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCATGAAC 20958 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 || || || || | ||||||| | || ||| | ||||| || || || || Sbjct 20959 TACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCTTCGAGACGATCTAC 21018 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||||| || ||| | ||| ||| | ||| || | | | |||| Sbjct 21019 TTTGCTGCCATGGAGACGTCG------ATGGAGATTGCCACGG---AATTGGGTCCTTAC 21069 Query 364621 GAGGGGTCCC----CTCTTTCGC-----AGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 ||| || || |||| || |||| | |||||||| || | ||| ||| Sbjct 21070 GAGACGTTCCAGGGCTCTCCGGCCAGTAAGGGTATCTTCCAGTTCGACATGTGGGGCGTC 21129 Query 364672 ACGC---CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728 || | |||||| | |||||||||| | ||| |||| | || || ||| Sbjct 21130 ACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATTAAACACGGT 21189 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 || ||||| || | || |||||||| || || || || || |||||||| || Sbjct 21190 CTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAGATCCTGGGC 21249 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCG 364846 |||||||||| |||| || ||||| | ||| | || || || || | | | Sbjct 21250 AACAACGAGTCTATCGAGCC--TTACACGTCCAACATGTACAACCGTCGTGTGTTGGCTG 21307 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | || || || | ||||| ||||| || | ||||| ||| ||| | ||| | || Sbjct 21308 GTGAGTTCACGATCGTTAACAAGTATCTGATGAAGGAGCTTATCGAGCTCGGCATTTG-- 21365 Query 364907 GTGACAGCATGAAGAACTATATCA-----TCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 ||| || |||| || |||| | | | ||| || |||||||| || Sbjct 21366 --GAC-GCCGGAAGTACGTAATCAGATTCTGAATGATGGTGGCTCGGTGCAGAA-GGTCA 21421 Query 364962 AGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GA 365019 |||| |||| || ||| | ||| | ||||| || || ||||| || || || || Sbjct 21422 AGGACATTCCGGATGATGTTAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGA 21478 Query 365020 A--CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTA 365077 | || | | || || |||| || || || |||| |||||| ||||| |||||||| | Sbjct 21479 AGGCTGTTCTGGACCTGTCGGCTGACCGTGGCGCTTATATCTGCCAGAGTCAGTCGTTGA 21538 Query 365078 ACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 || | ||| | | || || | ||||| || |||||||| || |||| |||| Sbjct 21539 ACATCCACATCGCCGACCCGACTATCAGTAAGCTGACGTCCATGCACTTTTACGCTTGGA 21598 Query 365138 AATCCGGTCTTAAGACAGG 365156 | || || ||||| || Sbjct 21599 AGAAGGGACTCAAGACCGG 21617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303264810257894