Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq135 158 1e-33 seq290 152 5e-32 seq188 143 3e-29 seq510 140 3e-28 seq204 104 2e-17 >seq135 Length=100430 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||||||| | || | || |||||||| || ||||||||||||||| Sbjct 42821 CCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 42880 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 42881 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGA 42940 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || |||||||| | | || | | || | | ||| | | Sbjct 42941 ATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 43000 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || ||||| | || || ||||| |||||||| Sbjct 43001 TCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 43047 >seq290 Length=60535 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | |||||||||||| || |||||||| || | Sbjct 10694 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 10635 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 10634 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 10575 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||||||||||||| | || | | || | | ||| | | Sbjct 10574 ATTCCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 10515 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 10514 TCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 10468 >seq188 Length=115905 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 15380 CCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15439 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 15440 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15499 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 15500 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 15559 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | || || |||||||||||||| Sbjct 15560 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 15606 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| || ||| Sbjct 14696 CCGCCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14755 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 14756 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 14815 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 14816 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 14875 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | || || ||||| |||||||| Sbjct 14876 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 14922 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| || ||| Sbjct 14924 CCGCCTCGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14983 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 14984 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15043 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 15044 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 15103 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | || || ||||| |||||||| Sbjct 15104 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15150 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 15152 CCGCCTCGAAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15211 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||| Sbjct 15212 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15271 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 15272 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 15331 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | || || ||||| |||||||| Sbjct 15332 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15378 >seq510 Length=41021 Score = 140 bits (154), Expect = 3e-28 Identities = 721/1123 (64%), Gaps = 49/1123 (4%) Strand=Plus/Minus Query 145052 TACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTG 145111 |||| || |||| | ||||| || |||||||||||||| |||| ||| |||||| Sbjct 21332 TACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTG 21273 Query 145112 AAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTAC 145171 | || || | ||||||||| ||||||||||| ||||| || | || || |||||| Sbjct 21272 TAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGT 21213 Query 145172 GCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAA 145231 || |||| | || || || || ||||| || ||| ||| || ||||| | |||| Sbjct 21212 GCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAG 21153 Query 145232 TCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 | ||| ||| || | || | ||| ||||||||||| |||| || || |||| ||| Sbjct 21152 TTCCAAAGCCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTG 21093 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-TCG 145346 || || ||| || || | |||| | ||||| | |||| | ||| || | || Sbjct 21092 GCCGGAGAGCCCTGGAACGTCTCGTAA-GGACCCAATTCCGTGGCAATCTC-CATCGACG 21035 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGA--GCAGCATCGCTTC 145404 ||||| || | || || || |||||| || | | |||| | || | |||| Sbjct 21034 TCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGA--GCTTG 20977 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 ||||||| ||| | || || | || ||||| || || ||||| | || | Sbjct 20976 CGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAAT 20917 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGAT-ATCGATTAC 145523 || ||||| ||||| ||||||| | | | ||| | | ||||| || | | || Sbjct 20916 ACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGAC 20857 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAA 145583 |||||| | || || | ||| ||| | ||||| | | || | | Sbjct 20856 -GTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGT 20798 Query 145584 AGTCAAACCGAGCCTCGTCAACGACCACA--CAGCTATTGACGGCGATCGACGCCAAATT 145641 |||| ||| | | | || || | || | |||| || | |||||||| || Sbjct 20797 AGTCGAACACACCGTTTTCCACAAACATAGGCAGC--------GCCACAGACGCCAAGTT 20746 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || |||||| ||| || || | || |||| | | || ||| ||| || ||||| Sbjct 20745 GCACACTGCCACCTCATCGGGTGACG-TGTACTCCATGACTTCGCAGCATAAGTTGCTGG 20687 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | ||| || || || || ||||| || || | ||| |||||||||||||||| Sbjct 20686 AACGGATCGTACCAAG-TTCTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTAGAGCA 20628 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC 145818 || | || | || ||||| | ||| | || | |||| ||| || | ||| || Sbjct 20627 TGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAAC--CACAGCTGCTGAGC 20570 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAAC 145876 | || | || || || | ||||| |||| | |||||| |||||| Sbjct 20569 GTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAGAGCT--TCAAAC 20512 Query 145877 GCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACG 145936 | || |||| ||| |||| || ||| | ||||||||| | || ||| | Sbjct 20511 TCATCGCC-CAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACAAACTCCACTTG 20453 Query 145937 CCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCG 145996 || ||||| | || | || ||| || | ||| ||||||||||||||||| | ||||||| Sbjct 20452 CCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGTAAAACAAGTCG 20393 Query 145997 C-GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAGA 146051 | |||| |||| |||| ||| ||| ||| || || || | ||| | | Sbjct 20392 CGGCGCGGTGCA--GCTCATTACCGTGGTT---CTTACGCAGATCCAGGA-ACTCGAACA 20339 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCT 146108 ||| ||||||||||| || | |||| |||| | || || || || || |||| Sbjct 20338 CGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTCCGCCCT 20279 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||||||| | || || ||| |||||| || |||| |||||| Sbjct 20278 GGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGG 20236 >seq204 Length=54989 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 44402 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44343 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || |||||||| || ||||| |||||||||||||| | | Sbjct 44342 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 44283 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || | || || || | Sbjct 44282 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 44223 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 44222 AGATCTGCATGA 44211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471981428849280