Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq126 150 2e-31 seq510 140 4e-28 >seq126 Length=136461 Score = 150 bits (166), Expect = 2e-31 Identities = 387/581 (67%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| || ||| | |||||||| | ||| || | ||||| || || | || Sbjct 10882 CAGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGA 10823 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 |||||||| ||||| ||||| || |||||||| ||||| ||| || || || || ||||| Sbjct 10822 CCGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGA-GCAGAAAGAGCCCGAGAAGAA 10764 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-----CGCTG-TC 32833 || ||||| || || || || || | || | ||| || || ||| | || Sbjct 10763 GATGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAGGATACACGCGGGTC 10704 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | | |||||| | ||||| | |||||||| | |||||||| || ||||| || || Sbjct 10703 --GCA-CCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGC 10647 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | | ||||| || || || | || || | || || ||||| | || || Sbjct 10646 ACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCAATGAGCAGTGAGTA 10587 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||| |||||||| |||||||| || || || || |||||||| | |||||||| Sbjct 10586 GACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGAGCCTCGGG 10527 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| ||||| | | || |||| || || || || ||||| || ||||||||| Sbjct 10526 CACCTGCACTTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTCACGATACCGTCACTG 10469 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 ||||| || || || | || || || || || | | |||| || || || || Sbjct 10468 GCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCGCTCGTTGTCCGTGAGCTTGCTC 10409 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || || |||| || | | || | || || | ||||| || || ||||| || Sbjct 10408 CAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTCAGCCGTCCAGAAGGAGGCCTCGGCT 10349 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 || || ||||| | ||| | || || | ||||| || || Sbjct 10348 TTCTTGTACATCTGCCACACTTCGTGTTCCTGAATGGGGAA 10308 >seq510 Length=41021 Score = 140 bits (154), Expect = 4e-28 Identities = 714/1126 (63%), Gaps = 12/1126 (1%) Strand=Plus/Minus Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || || || |||||||| ||||| || | || | |||| | |||| || || | || Sbjct 21017 TAGATCGTCTCGAAGATGTTCTTGTTCAATTCACGAGCTTGCGGGCTCTCGAACGCGTAG 20958 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 || | ||| || ||||| || || | || || || |||||||| || || | ||| | | Sbjct 20957 TTCATGAGGATGAACGCATCCGCCAGACCCTGGACGCCAATACCAATGGGACGATGGCGC 20898 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | || || | ||| |||| || ||||||||| || | || || | || ||||| Sbjct 20897 ATGTTGGACTTGCGAGCCTCTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGG 20838 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT 62731 || | || || |||||||| || | |||| | | || || || | | Sbjct 20837 TTGCGCGTGATCACCTTGACCACCTCATACAGTCTCTTGTAGTCGAACACACCGTTTTCC 20778 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 |||||||| || || ||||| |||| || || || || ||||||| | || Sbjct 20777 ACAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTG 20718 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 || | || | || ||| | || || | ||| || || || || || || || Sbjct 20717 TACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACC-AAGTTCTGCTGGTTC 20659 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| |||| || ||||| || || ||||| || || || |||||||||| Sbjct 20658 GACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCG 20599 Query 62912 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTC 62969 |||| || || ||| | | || |||| || ||| | | | | || || || Sbjct 20598 TCTAGGATAGCGAACCACAGCTGCT-GAGCGTTGATTGTCTTACGCGCACGTCCTTCCT- 20541 Query 62970 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 | ||||| | ||||| ||| ||||| || ||| || | || ||| |||||| Sbjct 20540 TCTCGTACTTTTCATACAGAGCTTCAAACTCATCGCCCAGCAC-TCGTACAGACCAGGAG 20482 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 ||| | ||||| | ||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 20481 CTTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGAT 20422 Query 63090 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63149 |||| | ||| || || ||| | || | || | || ||| || || |||| Sbjct 20421 CAGGCACCCACAGCGCGTAAAACAAGTCGC-GGCGCGGTGCAGCTCATTACCGTGGTTCT 20363 Query 63150 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63209 | ||||| |||||| | | | || | |||||||| |||||||| || || | Sbjct 20362 TACGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACG 20303 Query 63210 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63269 || || || ||| ||||| || | || | ||| |||| ||| | || | || Sbjct 20302 AGCCCTTGCGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCA 20243 Query 63270 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCAC 63329 ||| ||| ||||| || || || | || || || || ||| ||||| | |||| | Sbjct 20242 ACA-TGGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGC 20184 Query 63330 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387 | || | | | | |||| ||| || || || ||| ||||||||| | |||||| | Sbjct 20183 GGATGTTGTGCATACTGAT--ACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 20126 Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||| || || || |||||||| ||| |||||| ||| | ||| || || Sbjct 20125 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 20066 Query 63448 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 ||||| || |||| || || || || || | ||||| | ||||| || || | Sbjct 20065 AGACAACTGAGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAA 20006 Query 63508 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63567 || | || | || | ||||||||| | || || | || || | | || || || Sbjct 20005 CTTCTGCGACATGAGCTCGTACGTCTCCAGTGCGGACTTGATGTCGCTCTTGTGGATGCC 19946 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 || || ||||||| | ||| ||||| || | || || | |||| Sbjct 19945 TAACGCTACACGCAGAATCATTTGCTGCGGCCGCTCCACCACCTTG 19900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633589887233200