Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq507 201 2e-46 seq126 123 5e-23 seq601 104 5e-17 seq1687 102 2e-16 seq1058 102 2e-16 seq2995 84.2 4e-11 seq2816 84.2 4e-11 seq2754 84.2 4e-11 seq2031 84.2 4e-11 >seq507 Length=28664 Score = 201 bits (222), Expect = 2e-46 Identities = 455/671 (68%), Gaps = 25/671 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||| | || |||||||||||||||||||| |||| || |||| ||||| | | | Sbjct 16041 GTGGGTACCCTTTCGGGTGGTTGGAAGATGAAACTGGAGCTGGCTCGTGCCATGTTGCAG 16100 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| |||| || ||||||||||| || |||||| |||| || ||||| ||| Sbjct 16101 AAGGCCGACATCCTGCTTCTTGATGAGCCCACGAACCACTTGGATGTCAAGAACGTTGCC 16160 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| || || ||| ||| || ||||| |||| || || |||||| Sbjct 16161 TGGCTGGAGAACTACCTGACGAGCCTGCCGAACGTGACTTCCATCATGGTGTCGCACGAC 16220 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAG 279932 ||||||||||| || |||||| | |||||||||||| ||| | || |||||| Sbjct 16221 TCTGGCTTCCTCGACAACGTGTGTACCAACATCATTCACTACGAGACCCGTAAGCTGAAG 16280 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 ||| |||| || ||||| || ||||||| || |||||||| ||| Sbjct 16281 ATCTACAAG------GGTAACCTCTCCAAGTTCGTGGAGCAGAAGCCTGAGGCCAAGGCC 16334 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || || || | | || ||||| ||||| ||||| || || || | Sbjct 16335 TACTACGAGCTCGAGTCGGAGAACGTCAAGTTCATCTTCCCCGAGCCTGGTTTCCTTGCT 16394 Query 280053 GGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 | |||| | | ||| || || | ||||| || | | | | | | || Sbjct 16395 GACATCAAGAACAAGGGTAAGC-CCATCATTCGTCTGACCAAC-TGTTCGTACCAGTACC 16452 Query 280112 CAATGGCCCCAA--CATC-TTCAGCAGTGTCAACTCGCAGGT-TTCTAT---GAACTCAC 280164 | ||||||| | || ||| || || || | || | || | || | | Sbjct 16453 CGGGTGCCCCAAGCCGTCGATCAACAACATC-TCTGTGACGTGTGCTCTTTCGAGC---C 16508 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | || | ||| | |||||||| ||||| ||||||||||| || ||||| | ||||| | Sbjct 16509 GTATCGCTGTGCTGGGACCCAACGGTGCCGGTAAGTCTACGCTGATCAAGATGCTGACGG 16568 Query 280225 GCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 | || || | || || |||| || |||||||| || |||||| | || ||| Sbjct 16569 GTGAAGTGGAGCCGAC-CAGTGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTAC 16627 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 |||||||||||||||||||||||||| ||| ||||| || |||| | ||||| ||| Sbjct 16628 GTCGCTCAGCACGCTTTCCACCACATTGAGTCGCACCTTGATGAGACTGCCAACCAGTAC 16687 Query 280344 ATTCAGTGGCG 280354 || |||||||| Sbjct 16688 ATCCAGTGGCG 16698 >seq126 Length=136461 Score = 123 bits (136), Expect = 5e-23 Identities = 541/848 (64%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| | |||||||| | ||||| |||| || ||||| | Sbjct 11149 TCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCATGTCCATCCAGTCAAAAGGGTTCTTA 11090 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || | ||| ||||| ||||| | || | ||||| ||||| ||||| | Sbjct 11089 GCGTGGTAGATCTTGGACACACCAAGCGAGTAGAGCAGACGGTCAGCCACGAACTCAATG 11030 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||||| ||||||| | ||| ||| | |||| | Sbjct 11029 TACTGGCACATGAGGGCAGAGTTCATACCAATCAGCTCCACAGGGAGC-GAGTCACGCAC 10971 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || || | || | | || || || | || | | || | | | ||| Sbjct 10970 AAACTCGTGCTCAATCACCACAGCGTCACGAATGATCTCGTGTACACGGCTCTCTGGCAG 10911 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| | ||||||| ||||||| || | | || | ||||| |||||||| || Sbjct 10910 CTTGGTGACCAGCTTGGAGTACAAAAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACG 10851 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||||||| |||||| || | | ||| || ||||| | || || ||| | ||||| || Sbjct 10850 ACTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCATGAGGCCGCGCTTCTTTAGCCAAAA 10791 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | ||| || || || ||||| | | || || ||| | | || | ||||| Sbjct 10790 GATGGAGCAGAAAGAGCCCGAGAAGAAGATGCCTTCCACAGCAGCGAAAGCCAGCAGGCG 10731 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAAGAACTTCT---GTGCCCATGCTGCCTTCTTTCC 252038 ||| | | || | ||| | || || ||||||| |||||||| Sbjct 10730 CTCCGGGTAGGAGGATACACGCGGGTCGCACCACTTGAGTGCCCAGTGAGCCTTCTTCGT 10671 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || ||||| || || || ||| | |||| || | |||| |||||| ||| Sbjct 10670 GACACAAGGGATGGTCTCAATGGCACGCAGGAGATGGTCCTTCTCGATCGCGTCCTTGAT 10611 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | || |||| || || ||||| | |||||| || ||| || || |||||| | Sbjct 10610 GTACGTGTCAATGAGCAGTGAGTAGACCTCCGAGTGAATGTTCTCAATGGCGATCTGGAA 10551 Query 252159 AGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGTT 252218 ||||||| ||| || || | ||||| || ||||| | || | ||| Sbjct 10550 GCCATAGAAGCAACGAGCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCAAGTT 10491 Query 252219 CTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGACG 252278 ||| |||| || || || ||| |||| |||||| | || | | |||||||||||| || Sbjct 10490 CTCGTTCACGATACCGTCACTGGCTGCGAAGAAGGCGAGCACGTGCTTGATGAAGTGTCG 10431 Query 252279 CTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTCTTC 252338 ||| | ||| |||||||| | |||||| | ||| || || | || || Sbjct 10430 CTCGTTGTCCGTGAGCTTG---CTCCAGTCCTTGAGGTCGTGCACAAGGTCGAGCTCCTC 10374 Query 252339 CACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTACTTGA 252397 |||||||||| | || | | || ||||||||||| ||| |||| || | || | ||| Sbjct 10373 AGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGC-CACACTTC-GTGTTCCTGA 10316 Query 252398 TTGGGAAA 252405 |||| || Sbjct 10315 ATGGGGAA 10308 >seq601 Length=25350 Score = 104 bits (114), Expect = 5e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||||| |||| || || || || |||| |||||||||||||||||| Sbjct 13658 AAGGTGGCACAGTTGGCTGGCTACGTGTCTGAGCACTCTGCCTACCATCACGGTGAGCAA 13599 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||||| ||||| || || ||||| ||||||| || ||||| |||||||| || Sbjct 13598 AGTCTACAGGGCTGTATCGTGAATATGGCGCAGGACTTCGTTGGCAGCAACAACATCCAC 13539 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 | ||| ||| | |||||||| ||| | ||||| ||||||| || || Sbjct 13538 CTACTGTCCCCGATTGGTCAGTTCGGTACGCGTCTGATGGGTGGTAAAGA 13489 >seq1687 Length=9451 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 721 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 662 Query 142563 CCCCAC 142568 |||||| Sbjct 661 CCCCAC 656 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1290 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 1231 Query 142563 CCCCAC 142568 |||||| Sbjct 1230 CCCCAC 1225 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 2410 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 2351 Query 142563 CCCCAC 142568 |||||| Sbjct 2350 CCCCAC 2345 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 4102 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 4043 Query 142563 CCCCAC 142568 |||||| Sbjct 4042 CCCCAC 4037 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 4667 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 4608 Query 142563 CCCCAC 142568 |||||| Sbjct 4607 CCCCAC 4602 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 5789 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 5730 Query 142563 CCCCAC 142568 |||||| Sbjct 5729 CCCCAC 5724 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 6355 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 6296 Query 142563 CCCCAC 142568 |||||| Sbjct 6295 CCCCAC 6290 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 7482 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 7423 Query 142563 CCCCAC 142568 |||||| Sbjct 7422 CCCCAC 7417 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 8047 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 7988 Query 142563 CCCCAC 142568 |||||| Sbjct 7987 CCCCAC 7982 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 8612 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 8553 Query 142563 CCCCAC 142568 |||||| Sbjct 8552 CCCCAC 8547 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 9177 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 9118 Query 142563 CCCCAC 142568 |||||| Sbjct 9117 CCCCAC 9112 Score = 96.9 bits (106), Expect = 7e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 161 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 102 Query 142563 CCC 142565 ||| Sbjct 101 CCC 99 Score = 96.9 bits (106), Expect = 7e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 2974 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 2915 Query 142563 CCC 142565 ||| Sbjct 2914 CCC 2912 Score = 93.3 bits (102), Expect = 9e-14 Identities = 61/66 (92%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||| Sbjct 1854 AGCCCGTCTAGCTCAGTCG-TAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 1796 Query 142563 CCCCAC 142568 |||||| Sbjct 1795 CCCCAC 1790 Score = 93.3 bits (102), Expect = 9e-14 Identities = 61/66 (92%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||| Sbjct 3536 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGT-GGTTCGAG 3478 Query 142563 CCCCAC 142568 |||||| Sbjct 3477 CCCCAC 3472 Score = 93.3 bits (102), Expect = 9e-14 Identities = 61/66 (92%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||| Sbjct 5228 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGT-GGTTCGAG 5170 Query 142563 CCCCAC 142568 |||||| Sbjct 5169 CCCCAC 5164 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/66 (91%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct 6917 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTC--GGGTTCGAG 6860 Query 142563 CCCCAC 142568 |||||| Sbjct 6859 CCCCAC 6854 >seq1058 Length=15310 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 4717 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 4776 Query 142563 CCCCAC 142568 |||||| Sbjct 4777 CCCCAC 4782 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 5284 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 5343 Query 142563 CCCCAC 142568 |||||| Sbjct 5344 CCCCAC 5349 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 5852 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 5911 Query 142563 CCCCAC 142568 |||||| Sbjct 5912 CCCCAC 5917 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 6985 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 7044 Query 142563 CCCCAC 142568 |||||| Sbjct 7045 CCCCAC 7050 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 7550 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 7609 Query 142563 CCCCAC 142568 |||||| Sbjct 7610 CCCCAC 7615 Score = 96.9 bits (106), Expect = 7e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 6419 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 6478 Query 142563 CCC 142565 ||| Sbjct 6479 CCC 6481 >seq2995 Length=4973 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 1038 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 979 Query 142565 CCAC 142568 |||| Sbjct 978 CCAC 975 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 2544 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 2485 Query 142565 CCAC 142568 |||| Sbjct 2484 CCAC 2481 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 4057 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 3998 Query 142565 CCAC 142568 |||| Sbjct 3997 CCAC 3994 >seq2816 Length=5310 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 1517 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1576 Query 142565 CCAC 142568 |||| Sbjct 1577 CCAC 1580 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 3050 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 3109 Query 142565 CCAC 142568 |||| Sbjct 3110 CCAC 3113 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 4538 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 4597 Query 142565 CCAC 142568 |||| Sbjct 4598 CCAC 4601 >seq2754 Length=5423 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 2109 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 2050 Query 142565 CCAC 142568 |||| Sbjct 2049 CCAC 2046 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 3639 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 3580 Query 142565 CCAC 142568 |||| Sbjct 3579 CCAC 3576 >seq2031 Length=7438 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 2896 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 2837 Query 142565 CCAC 142568 |||| Sbjct 2836 CCAC 2833 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 4390 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 4331 Query 142565 CCAC 142568 |||| Sbjct 4330 CCAC 4327 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 5896 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 5837 Query 142565 CCAC 142568 |||| Sbjct 5836 CCAC 5833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027766779581597