Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq126 288 2e-72 seq510 224 2e-53 >seq126 Length=136461 Score = 288 bits (318), Expect = 2e-72 Identities = 577/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || || |||| |||||| || |||||| | ||||| | | ||| Sbjct 10338 ATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCACGAC 10397 Query 42369 ---ACGGCCGGCTGGGAG-TCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || | | | || |||| | | || ||| | ||| |||| || | || Sbjct 10398 CTCAAGGACTGGAGCAAGCTCACGGACAACGAGCGACAC----TTCATCAAGCACGTGCT 10453 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||||||||||| ||| |||||| || || || |||||| |||||| | |||| || Sbjct 10454 CGCCTTCTTCGCAGCCAGTGACGGTATCGTGAACGAGAACTTGGCCATGAACTTCAGCAA 10513 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 || |||||| ||||| || |||||||| ||||||||||| ||||| |||||| | Sbjct 10514 CGAAGTGCAGGTGCCCGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 10573 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCG 42601 ||||| ||||| ||| | |||||||| ||||||||||| ||| | ||||| Sbjct 10574 TCACTCGGAGGTCTACTC---ACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA 10630 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || || | ||||| ||||| || || || ||| ||||||||| ||||||| Sbjct 10631 GGACCATCTCCTGCGTGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGC 10690 Query 42662 GCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGC---GAGAGGCTGGTAGCCTTTA 42717 ||||| ||| ||| |||| | | | | | | ||| | ||| | || || Sbjct 10691 ACTCAAGTGGTGCGA----CCCGCGTGTATCCTCCTACCCGGAGCGCCTGCTGGCTTTCG 10746 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG- 42776 | || || || |||||||||||||||||| | ||| ||||||||| ||||| ||| || Sbjct 10747 CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGC 10806 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || |||||||| || | |||||||||||| |||||||| | |||||||| || Sbjct 10807 GCGGCCTC-ATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATG 10865 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | |||||| |||||||| ||| ||| | | ||| ||||| | || Sbjct 10866 CACACGGACTTCGCCTGCCTTTTGTACTCCAAGCTGGTCA---CCAAGCTGCCAGAGAGC 10922 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | | ||||| || || |||| ||| ||| | ||||| | | ||| Sbjct 10923 CGTGTACACGAGATCATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCG 10982 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || ||| ||| | || |||||| | |||||||||| ||||||| ||| ||| Sbjct 10983 CTCCCTGTGGAGCTGATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTG 11042 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 || |||| ||| || | | | | ||| | | ||||| || | | ||| || Sbjct 11043 GCTGACCGTCTGCTCTACTCGCTTGGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTT 11102 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||| | ||||| | | |||||||||||||||||||||||||| || | | Sbjct 11103 GACTGGATGGACATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGC 11162 Query 43137 GACTAC 43142 || ||| Sbjct 11163 GAGTAC 11168 >seq510 Length=41021 Score = 224 bits (248), Expect = 2e-53 Identities = 908/1408 (64%), Gaps = 52/1408 (4%) Strand=Plus/Minus Query 244070 AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129 ||| ||| | ||| | | |||| || | | ||||| || | || ||| || || | | Sbjct 21347 AGCTCCTTCATCAGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTG 21288 Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189 || | |||| || |||||||| ||| |||||||||| ||||| |||||| Sbjct 21287 TACATGTTGGACGTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAG 21228 Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGT 244249 || ||||||||||| | |||||||| ||| | | ||||| | || | | Sbjct 21227 GCTGTCGGCATGGGTGCAACCAGCAGCGAGTTACGGAGACCGTGTTTAATGACGTCATCT 21168 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 | || || ||||| ||| | |||| ||| | || ||| |||||||||||| Sbjct 21167 TTTAGTGCGGCCCAGTTCCAAA-GCCC-AGATGAAG----GTGTGACGCCCCACATGTCG 21114 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 ||||| | | ||||| ||| | || ||||| | | ||| ||| ||||| | Sbjct 21113 AACTGGAAGATACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCC 21054 Query 244370 TGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 ||| | || || | | || | ||| || ||||||| ||||||||||| |||| Sbjct 21053 GTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTT 20995 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGT-GAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 ||||| || || || |||| | | ||| | | | ||| | ||||| | || | Sbjct 20994 GTTCAATTCACGAGC-TTGCGGGCTCTCGAACGCGTAGTTCATGAGGATGAACGCATCCG 20936 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCTT 244544 |||| ||||| ||||| || || ||||| | || ||| ||||||| | || || | Sbjct 20935 CCAGACCCTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGA---CTTGCGAGCCT 20879 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGA 244604 | | || || ||| ||||| ||||||| ||||||||||||||||| ||||||| || Sbjct 20878 CTGCAACAGGATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGA 20819 Query 244605 CGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCA 244664 | || || ||| || ||||| || | || || ||| | Sbjct 20818 CCACCTCATACAGTCTCTTGTAGTCGAACACA-------CC---------GTTTTCC--A 20777 Query 244665 CAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGT 244724 ||||| || || || |||| |||||| || |||||||| || | |||| Sbjct 20776 CAAACATAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGT 20717 Query 244725 ACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGG 244784 ||| | | ||| ||| | ||| ||| | ||| || || || | ||| || || | Sbjct 20716 ACTCCATGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCAAGTT-CTGCTGGTTCG 20658 Query 244785 ACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGA 244844 ||||| ||| |||||||||||||||||||||||| | || ||||| | ||| ||| Sbjct 20657 ACTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGT 20598 Query 244845 CGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCT 244904 | |||| | ||| || | | ||| |||| ||| | || || || || || Sbjct 20597 CTAGGATAGCGAACCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCT 20538 Query 244905 CGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACG 244964 |||| ||||| || || ||||| |||| || ||||| || || || | Sbjct 20537 CGTACTTTTCATACAGAGCTTCAAACTCATCGCCC-AGCACTCGTACAGACCAGGAG-CT 20480 Query 244965 ACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 || ||| || | | |||||||| ||| | ||| || |||| ||||||||| || Sbjct 20479 TCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCA 20420 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 || | ||| || || | || | ||| | || | ||| || || |||||| Sbjct 20419 GGCACCCACAGCGCGTAAAACAAGTCGC-GGCGCGGTGCAGCTCATTACCGTGGTTCTTA 20361 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 | ||| |||| || || || |||||| ||||||| ||||||| ||||| ||||| | | Sbjct 20360 CGCAGATCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAG 20301 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCG 245199 || ||||| || |||||||||| | | ||||| |||| || | || Sbjct 20300 CCCTTGCGCTTACCTCCGCCCTGGTCCA----CATAGCGAGCCGTGTCGTTAAACACACG 20245 Query 245200 CAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCC 245259 || | || | |||||||||||| |||||| ||||| ||||||| | || | Sbjct 20244 CAACAT-GGGATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGC 20186 Query 245260 CCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 | || |||| || || || | ||||| || || ||||| |||||| Sbjct 20185 GCGGATGTTGTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTG 20126 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||| | |||||| |||||||| || ||| || ||| | || ||||| || Sbjct 20125 CTTTAGGGTGTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGA 20066 Query 245380 GGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 |||| ||| || | ||| | ||| | |||||| ||||| ||| ||||||| || ||| Sbjct 20065 AGACAACTGAGGACGTGGCG-TGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAG- 20008 Query 245439 AGCGGCT-CGAGAGGAACCCGTACGTCT 245465 | | || ||| | || | ||||||||| Sbjct 20007 AACTTCTGCGACATGAGCTCGTACGTCT 19980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944276436855920