Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq111 141 8e-29 >seq111 Length=87890 Score = 141 bits (156), Expect = 8e-29 Identities = 457/702 (65%), Gaps = 28/702 (4%) Strand=Plus/Minus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTA 20193 ||| || |||||||| ||||| || |||||| | | || || || | ||| | ||| Sbjct 66446 CGGGAACGGACGTGGTGTGCGTGTAAGCTGCTTCTGAAGGGGTTCCACATGGTTCAGGTA 66387 Query 20194 GATGTGGGCATCTCCC-AACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAG 20252 | ||| || || | |||||| || ||||| || ||| | || || || || || | Sbjct 66386 CACGTGTGCGTCGCGATAACGTGG--ATGAACTCGCCAGGTTTTAGTCCCGTCACTTGTG 66329 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 ||| || || | || | |||||||||||||| ||||| ||||| | |||||||| Sbjct 66328 CAACCAGTCGTGTCAGCAGCGCGTAGCTGGCAATGTTGAAAGGCACTCCAAGACCCATGT 66269 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATA 20372 | |||| | ||| |||| |||||| || | || |||| || || || || || || | Sbjct 66268 CGGCCGATCGCTGGTACATCTGACACGATAATTCCCCGTTGGCAACGTAGAACTGGCAGA 66209 Query 20373 ACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCACGCACACATA 20431 ||| ||| || ||||| || |||||| || || || |||||||||||||| ||| Sbjct 66208 ACATGTGGCAAGGCGGCAGGGCCATCT-CGTTGAGATCGGCCGGGTTCCACGCCGACAGC 66150 Query 20432 ATGATTCTTCTATCGTGCGGATTATT----TTTTATTAAATCCACAATGTACGACAATTG 20487 | || | || || ||||| | | | |||| | | | | || Sbjct 66149 ACAATCCGTCGGTCAGTAGGATTCGTACGCAGCTTGTGAATC----ACCTCTGCTAGCTG 66094 Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 ||| | || ||||| || ||||| |||| | |||| |||| || |||||||| | Sbjct 66093 GTCCACACCTTGGCCAGTGTAGTCTGCATGCATGTCCGTGTACTTGGCACCAAAGTGACG 66034 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCC 20607 ||||||||| |||||||| ||||| | || || || | | | ||| || || | Sbjct 66033 CCACTGGAAGCCGTAAACCGGTCCAAGGTCTCCAACCTCCCGATCCTGCAGTCCTCGGCT 65974 Query 20608 GGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTC 20667 |||| |||| | || ||||| |||||| || ||| | |||| ||| Sbjct 65973 ATCCAGATACTCGCGCGATCCATTGCCGTCCCAAAT-ATGAATATCTTTCT-----GCTG 65920 Query 20668 CCTGGAGTCAGTACT------CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCG 20721 | | || | ||| || | | |||||| || ||||| | |||| ||||| Sbjct 65919 CAGAGTGTGGGCACTTGTGTCTCCACTAATAAACCACAGTAGCTCCTCGGCTACACCTCG 65860 Query 20722 CCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG---TGGTCCCGCAGACTATACCTGGC 20778 ||| |||||||| || || || || || |||||| | || | |||||| |||| Sbjct 65859 CCAGAACACCCGTTTGGTCGTCAGCAATGGAAAGACATTGTTCTTCAGACTGAACCTCAT 65800 Query 20779 CTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 |||| ||||| | || | ||||| | || || ||||| Sbjct 65799 CTGCGCTCCAAAGACCGACAACGTGCCCGTTCCAGTACGGTC 65758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441343465260280