Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq290 95.1 1e-14 seq188 89.7 4e-13 seq135 86.0 5e-12 >seq290 Length=60535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || || || ||||||||| |||||||| || | Sbjct 10695 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 10636 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || | || || |||| || | ||||||||||| || ||||| |||||||| || || Sbjct 10635 CAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCG 10577 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | | ||| |||||| |||||| ||||| Sbjct 10576 GGATTCCCTCCTTGTCCTGAATTTTCTGCTT 10546 >seq188 Length=115905 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 15379 ACCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTC-GC 15437 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| |||| |||||||| || || |||| |||||||| || || Sbjct 15438 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 15497 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || || |||||| || |||||||| Sbjct 15498 GGATGCCTTCCTTGTCCTGGATCTTTTGCTT 15528 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| ||||||||||| || || || ||||||||| |||||||| || Sbjct 14923 ACCGCCTCGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACT 14982 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| |||| |||||||| || || |||| |||||||| || ||| Sbjct 14983 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGG 15042 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| || |||||||| Sbjct 15043 GATGCCTTCCTTGTCCTGGATCTTTTGCTT 15072 >seq135 Length=100430 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||||||||| ||||| || ||||||||| ||||||||||| || | || || Sbjct 42830 AGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCG 42888 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || ||||| |||||||| || ||| | || || Sbjct 42889 ACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGAATGCCTTC 42948 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 |||||| ||| || ||||| Sbjct 42949 CTTGTCCTGAATCTTCTGCTT 42969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397036669984234