Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq507 123 5e-23 >seq507 Length=28664 Score = 123 bits (136), Expect = 5e-23 Identities = 449/696 (65%), Gaps = 34/696 (5%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||||| Sbjct 16723 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAG 16664 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 16663 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTG 16604 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| || ||||| |||| ||| || || || Sbjct 16603 CTTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGA 16544 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATT 333553 || || ||||| || || | |||| | || | | ||| | | ||| Sbjct 16543 CTTACCGGCACCGTTGGGTCCCAGCACAGCGATACGGCT------CGAAA---GAGCA-- 16495 Query 333554 CACGTTGTCAAAGAT-TAGTTTTTCC----------GTACCCGGATACTTGAACCCCACA 333602 ||||| || |||| | ||| || | |||||| |||| | || ||| Sbjct 16494 CACGTCA-CAGAGATGTTGTTGATCGACGGCTTGGGGCACCCGGGTACTGGTACGA-ACA 16437 Query 333603 CCGCGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTC 333661 || || ||||||| |||| |||| | | ||||| || ||||| Sbjct 16436 GTTGGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTC 16377 Query 333662 GGGGAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGG 333718 |||||| | || | | ||| || |||| || ||||||| | | || || Sbjct 16376 GGGGAAGATGAACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGG 16320 Query 333719 ACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTC 333778 || || |||||||| ||| || || |||||||| |||||||||| || | || Sbjct 16319 CTTCTGCTCCACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTC 16263 Query 333779 GTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCAC 333838 ||| || || || ||| || || ||||||||| || |||||||| ||||| || | Sbjct 16262 GTAGTGAATGATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGCGACACCATGAT 16203 Query 333839 GCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGA 333898 | | | |||| | ||| | ||||||| | |||||| ||||| ||| Sbjct 16202 GGAAGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCAACGTTCTTGACATC 16143 Query 333899 AAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGC 333958 | ||||| || ||||| |||||||| || | | || ||| | | ||| ||||| || Sbjct 16142 CAAGTGGTTCGTGGGCTCATCAAGAAGCAGGATGTCGGCCTTCTGCAACATGGCACGAGC 16083 Query 333959 AAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGT 333994 || | |||||||| ||||| || || ||||| || Sbjct 16082 CAGCTCCAGTTTCATCTTCCAACCACCCGAAAGGGT 16047 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| ||||| || || |||||||| || || ||||| || Sbjct 15866 GGGGAATCCCTCAAGCTGGCCGTTGGAGATGGCACGCATCAGGGTCGACTTACCACAACC 15807 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| |||||||| || | || | |||||||| Sbjct 15806 GTTGGGACCGCACAGACCGTAACGGTGACCACGCTTAAGGCGAAGACGAGCGTTGTTCAG 15747 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||||| | ||||| || || || || || || || | ||||| || Sbjct 15746 CAGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 15699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102804867333950