Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq510 230 3e-55 seq126 158 1e-33 seq101 95.1 1e-14 >seq510 Length=41021 Score = 230 bits (254), Expect = 3e-55 Identities = 1085/1690 (64%), Gaps = 74/1690 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 21627 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 21568 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 113715 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 21567 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 21513 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||| ||||| || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 21512 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 21454 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 21453 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 21394 Query 113836 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 113893 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 21393 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 21336 Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 |||| ||| || || | |||||||| || | || | || || |||| | Sbjct 21335 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 21276 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 21275 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 21216 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGT--TCCTTGAGGGCG 114070 ||||| | || || |||||||||||| | || ||||| ||| || || || ||| Sbjct 21215 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 21159 Query 114071 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGA 114122 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 21158 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 21104 Query 114123 TACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGC--CAA 114180 |||| | ||| || || |||| || |||||||| || ||| | |||| ||| Sbjct 21103 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 21047 Query 114181 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 21046 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 20987 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACC 114297 | || | | || |||||| ||| || | || || ||||||| ||||| Sbjct 20986 CACGAGCTTGCGGGCTCTCGAACGCGTAGTT--CATGAGGATGAACGCATCCGCCAGACC 20929 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGG 114356 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | | Sbjct 20928 CTGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAG 20870 Query 114357 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 114416 ||||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 20869 GATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCAT 20810 Query 114417 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 || | | ||| || || || || | ||| ||| || |||| || || | Sbjct 20809 ACAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACA 20757 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 ||||||| || ||||| | |||||| |||||||| || | ||| || Sbjct 20756 GACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCAT 20697 Query 114536 AAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || || |||| || || || ||||||| || || ||||| |||| || Sbjct 20696 AAGTTGCTGGAACGG---ATCGTACC-AAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCG 20641 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 |||||||| |||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 20640 TCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA- 20582 Query 114653 ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGA 114710 || | || | | | || | | || | | || |||| |||||||||| || | Sbjct 20581 -CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACA 20523 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 | ||||||||||| || |||| | ||| | || || || || | | || ||||| | Sbjct 20522 GAGCTTCAAACTCATCGCCCA-GCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 20464 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | ||| | ||| |||| || | |||||||||||| || || | ||| || || Sbjct 20463 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 20404 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 | || | || || | | || || ||| || || || ||||| |||| || | Sbjct 20403 AAAACAAGTCGCGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAACT 20345 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGAC 114947 | | | || ||||||||||| |||| ||| | |||| || ||||| || || | Sbjct 20344 CGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTC 20285 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 | |||||| ||||| | || ||| | ||||| || || | ||| ||| | || || | Sbjct 20284 CGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGA-TAATGCCGT 20226 Query 115008 CAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCA 115067 ||| ||| || || || || || ||| |||| | || | || || | Sbjct 20225 TAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGA 20166 Query 115068 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 115127 |||| ||||| || ||||| || ||||| ||||| | | | || || |||| || | Sbjct 20165 TACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGC 20106 Query 115128 CGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 115187 | || || |||||| ||| | || | |||||||| |||| || || | ||| | Sbjct 20105 CCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCG 20046 Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCG 115246 | || ||||||||||| || || || ||||| |||| | || | || ||||| ||| Sbjct 20045 TGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCG 19987 Query 115247 TAGGTCTCCA 115256 || ||||||| Sbjct 19986 TACGTCTCCA 19977 >seq126 Length=136461 Score = 158 bits (174), Expect = 1e-33 Identities = 395/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | | ||| | Sbjct 11174 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 11115 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 11114 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 11055 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 11054 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 10995 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | ||| | | |||||| |||| || || || | || Sbjct 10994 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 10936 Query 125991 TGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC---- 126045 | |||| | | | | ||| | | | | || |||| |||| | | Sbjct 10935 TCTCGTGTACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 10882 Query 126046 -GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 ||| || || ||| | ||||||||||| |||||| || |||||||||| ||| | Sbjct 10881 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 10822 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | ||| || || | || || || ||||||||||||| Sbjct 10821 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 10762 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTTGTGTCA 126223 | || |||||| ||||| || | || ||||| | ||||| | || | ||| Sbjct 10761 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCG 10703 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 10702 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 10643 Query 126284 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 126330 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 10642 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 10596 >seq101 Length=123959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 172778 GCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCA 172837 ||||| || |||||| | || ||||| |||||||| |||||||| || || || ||| Sbjct 87936 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 87877 Query 172838 ACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 172889 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 87876 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 87825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597313898386360