Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq416 111 8e-20 >seq416 Length=42957 Score = 111 bits (122), Expect = 8e-20 Identities = 330/503 (66%), Gaps = 21/503 (4%) Strand=Plus/Plus Query 66066 GCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGAT 66125 |||| || || || || || || ||||| | | |||||| ||| || || |||||| Sbjct 30796 GCCTTTATTGATGCAGAGCACGCTATCGACGCCCACTACGCCAAGGCTCTGGGAGTGGAT 30855 Query 66126 GTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66185 | ||| ||| || |||||||||| |||| || | || |||||||||| ||| Sbjct 30856 ATTGACGCCCTCTACGTCTCGCAGCCAGACTCTGGAGAAGAAGCTCTGGAGATCGCAGAC 30915 Query 66186 CTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTG 66245 ||| || || || | || | | | || |||| |||||| || |||||| Sbjct 30916 ACGCTCATCCGATCGGGTGCTGTAGACCTTGTGGTGCTGGATAGTGTGGCAGCTCTGGTG 30975 Query 66246 CCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTG 66305 || || || ||||| || || || || || ||| ||| | | || || || || || Sbjct 30976 CCTCGTGCCGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCTCTACAAGCGCGTCTT 31035 Query 66306 ATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAA---CACGCTCACC 66362 ||| ||||| || | ||||||||||| | | ||| |||| ||| | | | Sbjct 31036 ATGAGCCAGGCACTGAGAAAGCTGACCGGGTCACTGTCCAAGTCCAATTGCACCATTATC 31095 Query 66363 CTGTGGGTGAATCAGCTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAG 66419 | | || ||| | || |||| | || || | | || | | ||||| | | Sbjct 31096 TTCC---TCAACCAGATCCGTCAGAAAGTAGGTATCATCTTTGGATCC--CCCGAG-GTG 31149 Query 66420 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAG- 66478 || | ||||||| ||| |||||| |||||| |||||||| ||||| ||||| | Sbjct 31150 ACGTCA---GGTGGTACGGCATTGCGCTACTACGCGTCGGTGCGGCTGGATATCCGCCGT 31206 Query 66479 --GATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536 || |||| | ||||||||||| ||| |||||||||| ||| || ||||| Sbjct 31207 AAGACAGCCATC---AAGGAAGGCGACCAGGTTGTCGGCAACGAGACGGTGGTCAAGGTG 31263 Query 66537 GTCAAGAACAAGCTGGCGCCTCC 66559 | |||||||||| |||| |||| Sbjct 31264 GCCAAGAACAAGTTGGCTTCTCC 31286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242454687690764