Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq510 293 2e-74 >seq510 Length=41021 Score = 293 bits (324), Expect = 2e-74 Identities = 884/1350 (65%), Gaps = 55/1350 (4%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || || |||||||| || || || || ||| ||||||| || ||||| Sbjct 20018 GCCACCCCTACTCTCTTCAACGCCGGCACGCCACGTCCTCAGTTGTCTTCTTGCTTCCTA 20077 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| ||||| ||| ||| | || || Sbjct 20078 TTGGCTATGCAGGATGACTCTATTGAGGGCATTTACGACACCCTAAAGCAATGCGCCTGT 20137 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| ||||| || ||||| |||||| | ||| || | || |||| | Sbjct 20138 ATCTCTAAATGGGCGGGCGGTATCGGTATCAGTATGCACAACATCCGCGCCACTAACAGC 20197 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| |||| |||||| | |||| ||| | || || || ||| Sbjct 20198 TACATCCGCGGCACGAACGGCTCCTCTAACGGCATTATCCC-ATGTTGCGTGTGTTTAAC 20256 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||| ||||||||||| || || | | | ||||| || ||||| |||| Sbjct 20257 GACACGGCTCGCTATGTGGACCAGGGCGGAGGTAAGCGCAAGGGCTCGTTCGCTATCTAC 20316 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| |||||| | ||| | || ||||| ||||||||||| || Sbjct 20317 TTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGATCTGCGTAAGAACCACGGTAAT 20376 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | ||| | ||| | || ||||| || |||||||| || || || ||||| Sbjct 20377 GAGCTGCACCGCGCC-GCGACTTGTTTTACGCGCTGTGGGTGCCTGATCTCTTCATGAAG 20435 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| || | |||||| | || |||||||| ||| ||| || |||| | Sbjct 20436 AGAGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAAGCTCCTGGTCTGTAC 20495 Query 94372 GA-CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || | | | ||| | | ||||||| |||||| ||||| | | || || Sbjct 20496 GAGTGCTGGGCGAT-GAG-TTTGAAGCTCTGTATGAAAAGTACGAGAAGGAAGGACGTGC 20553 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | ||| || | ||| | |||||||| ||| | |||| ||| | ||||| Sbjct 20554 GCGTAAGACAATCAACGCTCAGCAGCTGTGGTTCGCTATCCTAGACGCTCAGATTGAGAC 20613 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||||| ||| | | ||||||| | | ||| |||||| ||||||||| | || Sbjct 20614 GGGAGTGCCCTTCATGCTCTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAG-AACT 20672 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || |||| | || | ||| ||| | | ||||| || || || || || Sbjct 20673 TGGTACGATCCGTTCCAGCAACTTATGCTGCGAAGTCATGGAGTACACGTCACCCGATGA 20732 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | | || ||||| ||| ||| || | ||| | | || ||| || | || Sbjct 20733 GGTGGCAGTGTGCAACTTGGCGTCTGTGGCGCTGCCTATGTTTGTG-GAAA-----AC-- 20784 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG-- 94728 | | |||||| || | ||| ||| | | || | | || || | Sbjct 20785 -------GGTGTGTTCGA-CTACAAGAGACTGT--ATGAGGTGGTCAAGGTGATCACGCG 20834 Query 94729 -AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||| |||| ||| |||||| |||| || || || | ||||| || || || Sbjct 20835 CAACCTCAACAAGGTCATCGACGTCAACTATTATCCTGTTGCAGAGGCTCGCAAGTCCAA 20894 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || ||||| ||||| || || |||||||||||| | ||||| ||| | | | || Sbjct 20895 CATGCGCCATCGTCCCATTGGTATTGGCGTCCAGGGTCTGGCGGATGCGTTCATCCTCAT 20954 Query 94848 GCGTCTGCCCTACGACTCTGTCGA-----CGC-GGCGGGT---TTGAATTTGAACATATT 94898 | || || | |||| ||| || || ||||| |||||| || Sbjct 20955 G---------AACTACGCGTTCGAGAGCCCGCAAGCTCGTGAATTGAACAAGAACATCTT 21005 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | || || | | |||||| | || | | | |||| |||| || Sbjct 21006 CGAGACGATCTACTTTGCTGCCATGGAGACGTCGATGGAGATTGCCA---CGGAATTGGG 21062 Query 94959 GCCACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTC 95016 || |||| |||||| || || || | | | |||| || || ||||||||| | Sbjct 21063 TCCTTACGAGACGTTCCAGGGCTCTCCGGCCAGTA--AGGGTATCTTCCAGTTCGACATG 21120 Query 95017 TGGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATC 95073 ||||| || | | | || || || | |||||| || ||| | ||| || || Sbjct 21121 TGGGGCGTCACACCTTCATCTGGGCTTTGGAACTGGGCCGCACTAAAAGATGACGTCATT 21180 Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 ||||||||| | ||| ||||||| || || |||||||| || ||||||||||| ||| Sbjct 21181 AAACACGGTCTCCGTAACTCGCTGCTGGTTGCACCCATGCCGACAGCCTCCACGGCTCAG 21240 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||||| |||||||||||||| |||| || | ||| |||||| |||||||| | || ||| Sbjct 21241 ATCCTGGGCAACAACGAGTCTATCGAGCCTTACACGTCCAACATGTACAACCGTCGTGTG 21300 Query 95194 CTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | || || || ||| | || | |||||| Sbjct 21301 TTGGCTGGTGAGTTCACGATCGTTAACAAG 21330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494690319459320