Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq135 113 4e-20 >seq135 Length=100430 Score = 113 bits (124), Expect = 4e-20 Identities = 173/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 45102 TTTTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGA 45159 |||| ||||| | || ||||| || | || ||| || || || || || ||||| |||| Sbjct 42807 TTTTTTTTTAGTTACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGA 42866 Query 45160 TATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTT 45219 | || |||||||| | ||| | || || | || || || ||| | |||| || | Sbjct 42867 TGTTGTAATCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCT 42926 Query 45220 GCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTG 45278 ||||||| |||||||||||||| || || ||||| || || || | || | || | | | Sbjct 42927 GCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAG 42985 Query 45279 TCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 || || | ||| || ||||| |||| || |||||||| | || || || || || ||| Sbjct 42986 TCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGC 43045 Query 45339 ATC 45341 ||| Sbjct 43046 ATC 43048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451973158737320