Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq510 206 3e-48 seq126 176 6e-39 seq101 86.0 8e-12 >seq510 Length=41021 Score = 206 bits (228), Expect = 3e-48 Identities = 1080/1690 (64%), Gaps = 74/1690 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || |||||||| |||| |||||| || || | ||||| || | || ||| Sbjct 21627 GTAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTT 21568 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT------ACTTTGGGATTGATCGATGAA 115676 || || || | ||| || ||||| ||| ||| | ||| || || Sbjct 21567 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCA--GAT--AT-AA 21513 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 ||| || || || |||| || || | ||| ||||| |||||| |||||||| || | Sbjct 21512 GCG-CCACGGTCAGCCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTT 21454 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| | ||||| |||||| || || ||| || || || | |||||||| | || Sbjct 21453 GTACTTCTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATT 21394 Query 115797 GACCATGAGATCCTTCATA--TCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || ||| | | || ||| | ||| | || | || | || |||| || Sbjct 21393 CAGAATCTGAT--TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATC 21336 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 || | ||| || || | |||||||| || | || | || ||||||| | Sbjct 21335 AGATACTTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGAC 21276 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| | |||| ||||| |||| ||| || || ||||||||||| |||||| Sbjct 21275 GTGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATG 21216 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-CGT--TCCTTGAGGGCG 116031 ||||| | || || ||| |||||||| ||||| ||| || || || ||| Sbjct 21215 GGTGCAACCAGCAGCGAGTTACGGAGACCGTGTT---TAATGACGTCATCTTTTAGTGCG 21159 Query 116032 TCCCAGT-------CGTAGTTGA-GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGA 116083 |||||| | || ||| | | || | |||| |||| || ||||||| || Sbjct 21158 GCCCAGTTCCAAAGCCCAGATGAAGGTGTGACGCCCC-----ACATGTCGAACTGGAAGA 21104 Query 116084 TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC--CAA 116141 |||| | || || || |||| || ||||| || || ||| | |||| ||| Sbjct 21103 TACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCC---AATTCCGTGGCAA 21047 Query 116142 TTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 116200 | | | || ||| | ||| || || || ||||| || ||| |||| | Sbjct 21046 TCTCCATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATT 20987 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 | || | | || |||||| | || | || || ||||||| ||||| Sbjct 20986 CACGAGCTTGCGGGCTCTCGAACGCGT-AGTTCATGAGGATGAACGCATCCGCCAGACCC 20928 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA-CGGG 116318 ||||| || | ||||| || ||||| | ||| || ||||| ||||| ||| || | || Sbjct 20927 TGGACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCC-TCTGCAACAGG 20869 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 |||| | || ||||| ||| | || || || |||| ||||| | |||| Sbjct 20868 ATAATAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATA 20809 Query 116379 AAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 116437 || | | ||| || || || || | ||| ||| || |||| || || | | Sbjct 20808 CAGTCTCTTGTAGTCGAACACACCG----TTTTCC---ACAAACATAGGCAGCGCCACAG 20756 Query 116438 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 116497 |||||| || ||||| | |||||| |||||||| || | ||| || | Sbjct 20755 ACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCATGACTTCGCAGCATA 20696 Query 116498 AATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | || |||| || || || ||||||| || || ||||| |||| || | Sbjct 20695 AGTTGCTGGAACGG---ATCGTACC-AAGTTCTGCTGGTTCGACTTGCGGTTAGCTGCGT 20640 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| | ||| |||||||| | || | | || ||||| ||| Sbjct 20639 CCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAACCA-- 20582 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGAG 116672 || | || | | | || | | || | | || |||| |||||||||| || || Sbjct 20581 CAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATACAG 20522 Query 116673 GGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 || |||||||| || |||| || ||| | || || || || | | |||||||| | Sbjct 20521 AGCTTCAAACTCATCGCCCA--GCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAACA 20464 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | ||| |||| || | |||||||||||| || || | ||| ||||| Sbjct 20463 AACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCCACAGCGCGT 20404 Query 116792 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851 | || | || || | | || || ||| || || || ||||| |||| || | Sbjct 20403 AAAACAAGTCGCGGCGCGGTGCAGCT-CATTACCGTGGTTCTTACGCAGATCCAGGAACT 20345 Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGAC 116908 | | | || ||||||||||| |||| ||| | |||| || |||||||| || | Sbjct 20344 CGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGCGCTTACCTC 20285 Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968 | |||||| ||||| | ||||| ||||||| || || | ||| ||| | || || | Sbjct 20284 CGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGA-TAATGCCGT 20226 Query 116969 CAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCA 117028 ||| ||| || || || || || || |||| | || | ||| || | Sbjct 20225 TAGAGGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTGGCGCGGATGTTGTGCATACTGA 20166 Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088 |||| ||||| || ||||| || ||||| ||||| | | | || || |||| || | Sbjct 20165 TACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTGTCGTAAATGC 20106 Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148 | || || |||||| ||| | || | |||||||| |||| || || | ||| | Sbjct 20105 CCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGAGGACGTGGCG 20046 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCG 117207 | || ||||||||||| || || || ||||| |||| | || | || ||||| ||| Sbjct 20045 TGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGA-ACTTCTGCGACATGAGCTCG 19987 Query 117208 TAGGTCTCCA 117217 || ||||||| Sbjct 19986 TACGTCTCCA 19977 >seq126 Length=136461 Score = 176 bits (194), Expect = 6e-39 Identities = 399/588 (68%), Gaps = 18/588 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||| ||||| ||||| || | ||| ||| | Sbjct 11174 CTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGAGAGATCAT 11115 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||| |||||||| | || | || | | ||| |||| | | ||| Sbjct 11114 GTCCATCCAGTCAAAAGGGTTCTTAGCGTGGTAGATCTTGGACACACCAAGCGAGTAGAG 11055 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||||||||||| |||| ||||||||||||| || || Sbjct 11054 CAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGGGCAGAGTTCATACCAATCAG 10995 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| ||||||| ||| | ||| | | |||||| ||||||| || || | || Sbjct 10994 CTCCACA-GGGAGCGAGTCACGCACAAACTCGTGCTCAATCACCACAGCGTCACGAATGA 10936 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-- 127520 | |||| | | | | | ||| | | | | || |||| |||| | | || Sbjct 10935 TCTCGTGTACACGGCTCTCTGGCAGCT---TGGTGACCAG-CTTG--GAGTACAAAAGGC 10882 Query 127521 ---CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 | || || ||| | ||||||||||| |||||| || |||||||||| ||||| Sbjct 10881 AGGCGAAGTCCGTGTGCATGCCCTCGTCACGACTGATGAGCTCGTTCGAGAAGCTCAGAC 10822 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | |||||||| || |||||||| | ||| || || | || || ||||| |||||||||| Sbjct 10821 CGGGCATGAGGCCGCGCTTCTTTAGCCAAAAGATGGAGCAGAAAGAGCCCGAGAAGAAGA 10762 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCA 127696 | || |||||| ||||| || | || ||||| | ||||| | || | || Sbjct 10761 TGCCTTCCACAGCAGCGAAAGCCAGCAGGCGCTCCGGGTAGGAG-GATACACGCGGGTCG 10703 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 ||||||| | ||||| || ||||| ||| || ||| |||| ||||| || || Sbjct 10702 CACCACTTGAGTGCCCAGTGAGCCTTCTTCGTGACACAAGGGATGGTCTCAATGGCACGC 10643 Query 127757 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 127803 | ||| | | ||| || ||| | || ||||||||| | || ||||| Sbjct 10642 AGGAGATGGTCCTTCTC-GATCGCGTCCTTGATGTACGTGTCAATGAG 10596 >seq101 Length=123959 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 176798 GCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCA 176857 || || || |||||| | || || || |||||||| |||||||| || || || ||| Sbjct 87936 GCATCACGTACATTTAGAAGTTTACCACGCAGAGGGAAGACACCGTACTGGTCGCGTCCA 87877 Query 176858 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 176909 || || | || ||||| ||||| || | |||||| |||||||||||||||| Sbjct 87876 ACGACGGCCAGCCCAGCCACTGCAAGAGCCTTCGCTGAATCACCCTCCGTCA 87825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613466424777720