Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq510 165 1e-35 >seq510 Length=41021 Score = 165 bits (182), Expect = 1e-35 Identities = 416/621 (67%), Gaps = 21/621 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| |||||||| || |||| |||| || | | | || |||||||| Sbjct 21675 CTTGTCCACAGTGAACTGGATAGCGT---CGGCTTTCGGACGTCCGCGCATGTAGTACAT 21619 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | ||||||||| | ||| || || | | Sbjct 21618 GCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACGTCAGCTTACTGATAGT 21559 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||||| ||||| || ||| ||| ||| |||| || || | Sbjct 21558 CGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAG-CGCCACGGTCAG 21500 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | || | ||||||| |||||||||||||||||| || || | Sbjct 21499 CCGACAGGTCCAGAACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTAA 21440 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | | || | || | || | ||| | |||||| || || | ||| || Sbjct 21439 CATCATCCGGAATGTCCT-TGACCTTCTGCACCGAGCCACCATCATTCA-GAATCTGAT- 21383 Query 204134 CTCGT--CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 ||| ||| | ||| ||||| | | ||| |||||| || ||| | ||| | Sbjct 21382 TACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGATACTTGTTAA 21323 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| || || || | || ||| | ||| || ||| |||| ||| | || |||| Sbjct 21322 CGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACGTGTAAGGCTCGA 21263 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | |||||||| ||| ||| || |||||||| || | |||| Sbjct 21262 TAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGGGTGCAACCAGCA 21203 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | ||||| || | ||||| ||| ||| || || | || ||||| | || | Sbjct 21202 GCGAGTTACGGAGACCGTGTTTAATGACGTCATCTTTTAGTGCGGCCCAGT--TCCAAAG 21145 Query 204372 CACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 | | | ||| | |||||||||||||||||||| ||||| || | |||| | || Sbjct 21144 CCCAGATGAAGGTGTGACGCCCCACATGTCGAACTGGAAGATACCCTTACTGGCCGGAGA 21085 Query 204427 GCCCTTGTACGTCGGATAAGG 204447 ||||| | ||||| ||||| Sbjct 21084 GCCCTGGAACGTCTCGTAAGG 21064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795102351997520