Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq290 159 4e-34 seq204 152 6e-32 seq188 152 6e-32 seq135 138 1e-27 >seq290 Length=60535 Score = 159 bits (176), Expect = 4e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||| ||||| |||||||| || |||||||| | Sbjct 10683 ACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 10624 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| |||||||||||||||||||| |||| ||||||||||| | ||| | | |||||| Sbjct 10623 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCCTCCTT 10564 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGA 46556 |||| || |||| ||||| | | | || | |||| || ||||| || | ||||| Sbjct 10563 GTCCTGAATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGA 10505 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| |||||||| || || || || || || |||||||| Sbjct 10504 TGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 10465 >seq204 Length=54989 Score = 152 bits (168), Expect = 6e-32 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 44402 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44343 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | | |||||||||| ||| |||| ||||| | | | Sbjct 44342 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 44284 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | |||| || ||||| || | ||||||||| |||||||||| || || ||| Sbjct 44283 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 44224 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 44223 AAGATCTGCAT 44213 >seq188 Length=115905 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||||| |||||| || | |||| |||||| ||||| ||||||||| Sbjct 15152 CCGCCTCGAAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15211 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||| ||||| ||||| ||||||||||| | ||| Sbjct 15212 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15271 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| | ||||| ||| | | | || ||| | ||||| Sbjct 15272 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 15330 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||| || ||||| |||| || || || ||||| ||||| Sbjct 15331 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15378 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||||| |||||| || | |||| |||||| ||||| |||||||| Sbjct 14924 CCGCCTCGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTC 14983 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||| ||||| ||||| ||||||||||| | ||| Sbjct 14984 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15043 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| | ||||| ||| | | | || ||| | ||||| Sbjct 15044 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 15102 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||| || ||||| |||| || || || ||||| ||||| Sbjct 15103 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 15150 Score = 145 bits (160), Expect = 9e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| || | |||| |||||| ||||| |||||||| || ||||| | Sbjct 14707 ACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGTGCGGCC 14766 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||| ||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 14767 GTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCCTTCCTT 14826 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| | ||||| ||| | | | || ||| | ||||| |||| ||||| Sbjct 14827 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGA 14885 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| |||| || || || ||||| ||||| Sbjct 14886 TCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 14922 Score = 145 bits (160), Expect = 9e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||||| |||||| || | ||| |||||| ||||| ||||||||| Sbjct 15380 CCGCCTCGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15439 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||| ||||| ||||| ||||||||||| | ||| Sbjct 15440 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 15499 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| | ||||| ||| | | | || ||| | ||||| Sbjct 15500 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCAC 15558 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||| || ||||| |||| || || || || || ||||| ||| Sbjct 15559 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTTG 15610 >seq135 Length=100430 Score = 138 bits (152), Expect = 1e-27 Identities = 175/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| |||||| || | ||| |||||| ||||| ||||| Sbjct 42814 TTAGTTACCACCGCGAAGACGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTA 42873 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||| |||| |||||||||||||| ||||| |||| ||||||||||| Sbjct 42874 ATCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 42933 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | ||| | || ||||||||| ||||||| ||| | ||| | | | || ||| || Sbjct 42934 AGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACG 42992 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || | || ||||| ||||| |||| ||| || || ||||| ||||| || Sbjct 42993 GCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 43050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565200832842840